BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915225
Length=273
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00920.1 | Symbols: RRN16S.1 | chloroplast-encoded 16S ribos... 171 4e-42
ATCG01210.1 | Symbols: RRN16S.2 | chloroplast-encoded 16S ribos... 171 4e-42
> ATCG00920.1 | Symbols: RRN16S.1 | chloroplast-encoded 16S ribosomal
RNA | chrC:101012-102502 FORWARD LENGTH=1491
Length=1491
Score = 171 bits (92), Expect = 4e-42
Identities = 92/92 (100%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGCTGGCCATGCCCGAAGTCGTTACCTTAACCGCAAGGAGGGGGGTGCCGAAGGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 ATGGGAGCTGGCCATGCCCGAAGTCGTTACCTTAACCGCAAGGAGGGGGGTGCCGAAGGC 1421
Query 61 AGGGCTAGTGACTGGAGTGAAGTCGTAACAAG 92
||||||||||||||||||||||||||||||||
Sbjct 1422 AGGGCTAGTGACTGGAGTGAAGTCGTAACAAG 1453
> ATCG01210.1 | Symbols: RRN16S.2 | chloroplast-encoded 16S ribosomal
RNA | chrC:136147-137637 REVERSE LENGTH=1491
Length=1491
Score = 171 bits (92), Expect = 4e-42
Identities = 92/92 (100%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGCTGGCCATGCCCGAAGTCGTTACCTTAACCGCAAGGAGGGGGGTGCCGAAGGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 ATGGGAGCTGGCCATGCCCGAAGTCGTTACCTTAACCGCAAGGAGGGGGGTGCCGAAGGC 1421
Query 61 AGGGCTAGTGACTGGAGTGAAGTCGTAACAAG 92
||||||||||||||||||||||||||||||||
Sbjct 1422 AGGGCTAGTGACTGGAGTGAAGTCGTAACAAG 1453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12516669501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5