BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg915254 Length=747 Score E Sequences producing significant alignments: (Bits) Value AT5G50100.1 | Symbols: | Putative thiol-disulphide oxidoreduct... 409 2e-113 > AT5G50100.1 | Symbols: | Putative thiol-disulphide oxidoreductase DCC | chr5:20371853-20373441 FORWARD LENGTH=977 Length=977 Score = 409 bits (221), Expect = 2e-113 Identities = 327/375 (87%), Gaps = 20/375 (5%) Strand=Plus/Plus Query 218 TTAAATATCAAGTTAGGGCAATACAAGGAGCAAGTGTTGATCCTGTTGTTACACCATTGA 277 ||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||| | Sbjct 191 TTAAATATCAAGTTAGGGCGATACAAGGAACAAGTACTGATCCTGTCATTACACCATTAA 250 Query 278 AGAATAGAGAGGAACCAAAACCTCAAAATTGGAAAATCAAATTGCTTTATGATGGAGATT 337 |||| |||||||||||||| || ||||| |||||||||||| |||||||||||||||||| Sbjct 251 AGAACAGAGAGGAACCAAAGCCACAAAACTGGAAAATCAAAATGCTTTATGATGGAGATT 310 Query 338 GTCCTCTCTGTATGCGTGAGGTTAATAATATGCTTAAGGAAAGGAATGAGAAGTATGGAA 397 ||||||||||||||||||||||||||| | ||||| |||||||||||| || |||||| Sbjct 311 GTCCTCTCTGTATGCGTGAGGTTAATA-T--GCTTATGGAAAGGAATGAAAAACATGGAA 367 Query 398 CTATTAAGTTTGTCGACAT---TTC-----------CCC-GGAAGATAATCAAGGGCTAG 442 |||| |||||||||||||| ||| ||| |||||||||||||||||| | Sbjct 368 CTATAAAGTTTGTCGACATAAGTTCAAATGATTATTCCCCGGAAGATAATCAAGGGCTTG 427 Query 443 ATTACAAAACCGTAATGGGGCAAATCCATGCTATTGAATCTGATGGTAACGTGGTAATAG 502 |||||||||| || |||||||| || ||||| ||| | |||||||||||||| || | || Sbjct 428 ATTACAAAACAGTGATGGGGCAGATTCATGCCATTCAGTCTGATGGTAACGTTGTTA-AG 486 Query 503 GC-GTGGAGGCATTTAGGAGATTGTATGAAGAAGTTGGGCTTGGATGGGTTTACACTATC 561 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 487 GGTGTGGAGGCATTTAGGAGATTGTATGAAGAAGTTGGGCTTGGATGGGTTTACACTATC 546 Query 562 ACCAAATTTGAACCA 576 ||||||||||||||| Sbjct 547 ACCAAATTTGAACCA 561 Score = 158 bits (85), Expect = 9e-38 Identities = 112/124 (90%), Gaps = 6/124 (5%) Strand=Plus/Plus Query 1 ATGGCAACGAGAGGAGC---TG-T--TGCTGCATCCACAATATGGAAGCACCGAAGAAAC 54 ||||||||||||||||| || | |||||||||||||||||||||||||||||||||| Sbjct 64 ATGGCAACGAGAGGAGCTGTTGCTGCTGCTGCATCCACAATATGGAAGCACCGAAGAAAC 123 Query 55 CTTTCTCTTCGATCATTATCTCACCATTTCAATTCCAATTTCACTCCTCGAATCATCCCA 114 | |||||||||||||||||||| |||||||||| ||||||||| || | ||||||||||| Sbjct 124 CCTTCTCTTCGATCATTATCTCGCCATTTCAATCCCAATTTCAATCATAGAATCATCCCA 183 Query 115 ACAG 118 |||| Sbjct 184 ACAG 187 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36269054134 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5