BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915254

Length=747
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G50100.1 | Symbols:  | Putative thiol-disulphide oxidoreduct...   409    2e-113


> AT5G50100.1 | Symbols:  | Putative thiol-disulphide oxidoreductase 
DCC | chr5:20371853-20373441 FORWARD LENGTH=977
Length=977

 Score =  409 bits (221),  Expect = 2e-113
 Identities = 327/375 (87%), Gaps = 20/375 (5%)
 Strand=Plus/Plus

Query  218  TTAAATATCAAGTTAGGGCAATACAAGGAGCAAGTGTTGATCCTGTTGTTACACCATTGA  277
            ||||||||||||||||||| ||||||||| |||||  |||||||||  |||||||||| |
Sbjct  191  TTAAATATCAAGTTAGGGCGATACAAGGAACAAGTACTGATCCTGTCATTACACCATTAA  250

Query  278  AGAATAGAGAGGAACCAAAACCTCAAAATTGGAAAATCAAATTGCTTTATGATGGAGATT  337
            |||| |||||||||||||| || ||||| |||||||||||| ||||||||||||||||||
Sbjct  251  AGAACAGAGAGGAACCAAAGCCACAAAACTGGAAAATCAAAATGCTTTATGATGGAGATT  310

Query  338  GTCCTCTCTGTATGCGTGAGGTTAATAATATGCTTAAGGAAAGGAATGAGAAGTATGGAA  397
            ||||||||||||||||||||||||||| |  ||||| |||||||||||| ||  ||||||
Sbjct  311  GTCCTCTCTGTATGCGTGAGGTTAATA-T--GCTTATGGAAAGGAATGAAAAACATGGAA  367

Query  398  CTATTAAGTTTGTCGACAT---TTC-----------CCC-GGAAGATAATCAAGGGCTAG  442
            |||| ||||||||||||||   |||           ||| |||||||||||||||||| |
Sbjct  368  CTATAAAGTTTGTCGACATAAGTTCAAATGATTATTCCCCGGAAGATAATCAAGGGCTTG  427

Query  443  ATTACAAAACCGTAATGGGGCAAATCCATGCTATTGAATCTGATGGTAACGTGGTAATAG  502
            |||||||||| || |||||||| || ||||| ||| | |||||||||||||| || | ||
Sbjct  428  ATTACAAAACAGTGATGGGGCAGATTCATGCCATTCAGTCTGATGGTAACGTTGTTA-AG  486

Query  503  GC-GTGGAGGCATTTAGGAGATTGTATGAAGAAGTTGGGCTTGGATGGGTTTACACTATC  561
            |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  487  GGTGTGGAGGCATTTAGGAGATTGTATGAAGAAGTTGGGCTTGGATGGGTTTACACTATC  546

Query  562  ACCAAATTTGAACCA  576
            |||||||||||||||
Sbjct  547  ACCAAATTTGAACCA  561


 Score =  158 bits (85),  Expect = 9e-38
 Identities = 112/124 (90%), Gaps = 6/124 (5%)
 Strand=Plus/Plus

Query  1    ATGGCAACGAGAGGAGC---TG-T--TGCTGCATCCACAATATGGAAGCACCGAAGAAAC  54
            |||||||||||||||||   || |  ||||||||||||||||||||||||||||||||||
Sbjct  64   ATGGCAACGAGAGGAGCTGTTGCTGCTGCTGCATCCACAATATGGAAGCACCGAAGAAAC  123

Query  55   CTTTCTCTTCGATCATTATCTCACCATTTCAATTCCAATTTCACTCCTCGAATCATCCCA  114
            | |||||||||||||||||||| |||||||||| ||||||||| || | |||||||||||
Sbjct  124  CCTTCTCTTCGATCATTATCTCGCCATTTCAATCCCAATTTCAATCATAGAATCATCCCA  183

Query  115  ACAG  118
            ||||
Sbjct  184  ACAG  187



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36269054134


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5