BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg915275 Length=1296 Score E Sequences producing significant alignments: (Bits) Value AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1749 0.0 > AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:19302190-19304816 REVERSE LENGTH=2066 Length=2066 Score = 1749 bits (947), Expect = 0.0 Identities = 1033/1076 (96%), Gaps = 0/1076 (0%) Strand=Plus/Plus Query 221 TTGTTGAGGCAAAGAAGGCTGTTCCAAGAGATGATCACGCAGTTTTTAACAAAAGTAACA 280 ||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| Sbjct 633 TTGTTGAGGCAAAGAAGGCTGTTCCAAGAGATGATCACGTAGTATTTAATAAAAGTAACA 692 Query 281 GCAGCCTTCAGGGATCACCTGGCCCATCAACCACCAAGAAGATCTTTGTGGGAGGTTTGG 340 |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 693 GCAGCCTTCAGGGATCACCTGGCCCATCAAACTCCAAGAAGATCTTTGTGGGAGGTTTGG 752 Query 341 CTTCATCGGTGACTGAGGCTGAGTTCAAAAAGTATTTTGCTCAGTTTGGGATGATCACTG 400 | ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 753 CATCATCCGTGACAGAGGCTGAGTTCAAAAAGTATTTTGCTCAGTTTGGGATGATCACTG 812 Query 401 ATGTTGTGGTGATGTATGACCACAGAACTCAGCGGCCGAGAGGCTTTGGGTTCATCTCAT 460 |||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| Sbjct 813 ATGTTGTGGTGATGTATGACCACAGAACCCAGCGGCCTAGAGGCTTTGGGTTCATTTCAT 872 Query 461 ATGACTCTGAGGACGCTGTTGACAAAGTGCTGCAGAAGACATTCCACGAACTCAATGGTA 520 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 873 ATGACTCTGAGGAAGCTGTTGACAAAGTACTGCAGAAGACATTCCACGAACTCAATGGTA 932 Query 521 AGATGGTGGAGGTCAAACTCGCTGTTCCTAAGGAAATGGCTCTCAACACAATGCGGAACC 580 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 933 AGATGGTGGAGGTCAAACTGGCTGTTCCTAAGGATATGGCTCTCAACACAATGCGGAACC 992 Query 581 AAATGAATGTAAATAGCTTTGGCAGTAGTAGAATCAGTACATTGCTGAACGAGTACACCC 640 |||||||||||||||||||||||| ||||||||||||| |||| ||||| |||||||||| Sbjct 993 AAATGAATGTAAATAGCTTTGGCACTAGTAGAATCAGTTCATTACTGAATGAGTACACCC 1052 Query 641 AAGGATTCAGCCCGACTCCAATCTCTGGCTATGGAGTAAAACCTGAAGTTAGGTACAGTC 700 | ||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||| Sbjct 1053 AGGGATTCAGCCCGAGTCCAATCTCTGGTTATGGAGTGAAACCTGAAGTTAGGTACAGTC 1112 Query 701 CAGCAGTAGGTAATAGGGGCGGATTCTCACCGTTTGGACATGGATACGGAATCGAGCTGA 760 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1113 CAGCAGTAGGTAATAGGGGAGGATTCTCACCGTTTGGACATGGATACGGAATCGAGCTGA 1172 Query 761 ATTTTGAGCCAAACCAGACTCAGAACTACGGTTCTGGTTCCAGCGGAGGCTTTGGACGAC 820 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1173 ATTTTGAGCCAAACCAGACTCAGAACTACGGTTCTGGTTCCAGTGGAGGCTTTGGACGAC 1232 Query 821 CCTTTAGCCCTGGGTATGCTGCGAGTCTCGGCAGATACGGTAGCCAGATGGAAACGGGAG 880 ||||||||||||| |||||||||||||||||||| | ||||||||| ||||| |||||| Sbjct 1233 CCTTTAGCCCTGGATATGCTGCGAGTCTCGGCAGGTTCGGTAGCCAAATGGAGTCGGGAG 1292 Query 881 GAGCTAGTGTCGGGAACGGTTCTGTGCTAAATGCAGCAACAAAGAACCATTTATGGGGAA 940 |||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 1293 GAGCTAGTGTTGGGAACGGTTCTGTCCTAAATGCAGCACCAAAGAACCATTTATGGGGAA 1352 Query 941 ATGGTGGTCTAGGTTACATGTCAAACTCTCCGATATCAAGAAGCAGCTTCAGTGGAAACT 1000 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1353 ATGGTGGTCTAGGTTACATGTCAAACTCTCCGATATCAAGAAGCAGCTTCAGTGGAAACT 1412 Query 1001 CTGGAACGTCTTCACTAGGCAGCATTGGTGACAACTGGGGAACAGCTGCACGTGGACGTA 1060 |||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| | Sbjct 1413 CTGGAATGTCTTCACTAGGCAGCATTGGTGACAACTGGGGAACAGTTGCACGTGCACGCA 1472 Query 1061 GTAGCTACCCCGGTGAGAGAGGAGGTGTAGGATTAGAAGCAATGAGAGGAGTTCATGTTG 1120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1473 GTAGCTACCACGGTGAGAGAGGAGGTGTAGGATTAGAAGCAATGAGAGGAGTTCATGTTG 1532 Query 1121 GTGGTTACAGCAGTGGCTCAAGCAGCTTGGAGGCAGACTCTCTGTACAGCGACTCGATGT 1180 ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1533 GTGGTTACAGCAGCGGCTCAAGCATCTTGGAGGCAGACTCTCTGTACAGCGACTCGATGT 1592 Query 1181 GGCTTTCTCTGCCTGCAAAGGCAGAGGAAGGATTGGGAATGGGAGCATTGGACTTCATGT 1240 ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1593 GGCTTTCGCTGCCTGCAAAGGCAGAGGAAGGATTGGGAATGGGACCATTGGACTTCATGT 1652 Query 1241 CTAGAGGACCAGCTGGATACATCAACAGGCAACCAAACGGAGGAATTGCAGCTTAG 1296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1653 CTAGAGGACCAGCTGGATACATCAACAGGCAACCAAACGGAGGAATTGCAGCTTAG 1708 Score = 377 bits (204), Expect = 1e-103 Identities = 216/222 (97%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 1 ATGGAAATGGAATCATGTAAGCTCTTCATCGGTGGTATATCTTGGGAAACCAGTGAAGAT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 347 ATGGAAATGGAATCATGTAAGCTCTTCATCGGTGGTATATCTTGGGAAACCAGTGAAGAT 406 Query 61 CGTCTTCGTGAGTATTTTCACAGTTTTGGTGAGGTTTTAGAGGCTGTTATTATGAAGGAT 120 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 407 CGTCTTCGTGACTATTTTCACAGTTTTGGTGAGGTTTTAGAGGCTGTTATTATGAAGGAT 466 Query 121 CGTGCCACTGGTCGTGCTCGTGGCTTTGGTTTCGTTGTCTTTGCTGATCCTATTGTTGCT 180 ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 467 CGTGCCACTGGCCGTGCTCGTGGCTTTGGTTTCGTTGTCTTTGCTGATCCTAATGTTGCT 526 Query 181 GAGCGAGTCGTTTTGCTTAAACATATCATTGATGGTAAAATT 222 || ||||||| |||||||||||||||||||||||||||||| Sbjct 527 GAAAGAGTCGTCTTGCTTAAACATATCATTGATGGTAAAATT 568 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63754692150 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5