BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915315
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47240.1 | Symbols: atnudt8, NUDT8 | nudix hydrolase homolog... 1720 0.0
> AT5G47240.1 | Symbols: atnudt8, NUDT8 | nudix hydrolase homolog
8 | chr5:19183601-19185644 FORWARD LENGTH=1492
Length=1492
Score = 1720 bits (931), Expect = 0.0
Identities = 1053/1109 (95%), Gaps = 19/1109 (2%)
Strand=Plus/Plus
Query 1 ATGGATTCTGTTTCTCTTTCTGAGGTTACTGCT-ATT--A-GAAGAACACATTTGGGTTT 56
||||||||||||||||||||||||||||||| | ||| | ||| |||||||||||||||
Sbjct 206 ATGGATTCTGTTTCTCTTTCTGAGGTTACTG-TCATTAAAGGAACAACACATTTGGGTTT 264
Query 57 TATGCACAGTTTCAGACAACCATTTTCTGGTGTTC-CAATACCTCCAAAGTTCTGTTCCT 115
|||||||||||||||||| ||||||| ||||| || |||| |||||||||||| || |
Sbjct 265 TATGCACAGTTTCAGACAGCCATTTTGTGGTG-TCAAAATATCTCCAAAGTTCTATTTAT 323
Query 116 CCAAAGTTGATGGACCAAAGGCAACAT-TGTC-A--AGCAATACAAAGAGCCAATCTGTT 171
|||||||||||||||||||||||| || | || | ||||| |||||||| |||| ||||
Sbjct 324 CCAAAGTTGATGGACCAAAGGCAATATCT-TCGAGCAGCAACACAAAGAGTCAATTTGTT 382
Query 172 TAT---GGAGGAAGCATAGCTGCAACTTCAGATTCAGGTTACAAGATGAATGGAGTAAAC 228
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 383 TATGGAGGAGGAAGCATAGCTGCAACTTCAGATTCAGGTTATAAGATGAATGGAGTAAAC 442
Query 229 CTAAAAAGCAGAACATTGATCAGTTCT---GTTAAAGAAAGATTATTACTTGATGCTTAT 285
|||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||
Sbjct 443 CTAAAAAGCAGAACATTGATGAGTTCTGCAGTTAAAGAAAGATCATTACTTGATGCTTAT 502
Query 286 GATGATGAGTATGGTGGAGTAATAGTTGATCATGGAAAATTACCATCAAACCCTTACGCT 345
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 503 GATGATGAGTATGGTGGAGTAATAGTAGATCATGGAAAATTACCATCAAACCCTTATGCT 562
Query 346 TTCGCTTCTATGCTTCGAGCTTCTCTATCCGATTGGAGAAGAAAGGGAAAGAAAGGAGTT 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 TTCGCTTCTATGCTTCGAGCTTCTCTATCCGATTGGAGAAGAAAGGGAAAGAAAGGAGTT 622
Query 406 TGGTTAAAGTTACCTGTGGAACAATCAGAATTAGTCCCAATAGCTATAAAGGAAGGTTTT 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 TGGTTAAAGTTACCTGTGGAACAATCAGAATTAGTCCCAATAGCTATAAAGGAAGGTTTT 682
Query 466 GAGTATCATCATGCAGAGAAACGATATGTGATGTTAACATATTGGATACCAGAGGAGGAA 525
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 683 GAGTATCATCATGCAGAGAAAGGATATGTAATGTTAACATATTGGATACCAGAGGAGGAA 742
Query 526 CCTAGTATGCTTCCTGCAAATGCTTCACATCAAGTTGGTGTTGGAGGTTTTGTACTAAAT 585
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 743 CCTAGTATGCTTCCTGCAAATGCTTCACATCAAGTTGGTGTTGGAGGTTTTGTATTAAAT 802
Query 586 GAACAGAAAGAGGTGCTTGTGGTACAAGAAAAGTATTGTGCTCCATCGATTACAGGTCTA 645
|||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 803 CAACATAAAGAGGTGCTTGTGGTACAAGAAAAGTATTGTGCTCCTTCGATTACTGGTCTA 862
Query 646 TGGAAGTTACCAACAGGGTTTATTAATGAATCTGAAGAGATTTTCTCTGGTGCTGTAAGA 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 TGGAAGTTACCAACAGGGTTTATTAATGAATCTGAAGAGATTTTCTCTGGTGCTGTAAGA 922
Query 706 GAAGTCAAGGAGGAAACTGGGGTAGATACAGAGTTCTCAGAGGTTATAGCTTTCAGACAT 765
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 GAAGTCAAGGAAGAAACTGGGGTAGATACAGAGTTCTCAGAGGTTATAGCTTTCAGACAT 982
Query 766 GCTCACAACGTTGCATTTGAGAAATCTGATCTGTTCTTCATCTGTATGTTGAGACCACTT 825
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 GCTCACAACGTTGCATTTGAGAAATCTGATCTGTTCTTCATCTGTATGTTGAGACCACTC 1042
Query 826 TCTGATAAGATAATCATCGATGGTCTTGAGATCAAAGCCGCAAAGTGGATGCCTTTGGCG 885
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1043 TCTGATAAGATAATCATCGATGCTCTTGAGATCAAAGCCGCAAAGTGGATGCCATTGGCT 1102
Query 886 GAATTTGTGGAGCAACCGATGATAAGAGAAGACAAAATGTTTAAGAGAGTGATTGAAATC 945
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1103 GAATTTGTGGAGCAACCGATGATAAGAGGAGACAAAATGTTTAAAAGAGTGATTGAAATA 1162
Query 946 TGCGAGGCGAGACTAAGGCATCGGTACTGCGGTCTTTCTCCTCATAGACTTGTCTCTACT 1005
|||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1163 TGCGAGGCGAGATTAAGCCATCGGTACTGCGGTCTTTCTCCTCATCGACTTGTCTCTACT 1222
Query 1006 TTTGATGGCAAACCTTCTTCTCTCTATTACAACGTTGTTGATGATGATCATGATCCTTCC 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 TTTGATGGCAAACCTTCTTCTCTCTATTACAACGTTGTTGATGATGATCATGATCCTTCC 1282
Query 1066 CACTCCAATTGTAACACTGATTATTTATA 1094
||||||||||||| |||||| | ||||||
Sbjct 1283 CACTCCAATTGTAGCACTGAGT-TTTATA 1310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53664382605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5