BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg915640 Length=300 Score E Sequences producing significant alignments: (Bits) Value AT3G23890.1 | Symbols: TOPII, ATTOPII | topoisomerase II | chr3... 219 2e-56 > AT3G23890.1 | Symbols: TOPII, ATTOPII | topoisomerase II | chr3:8624750-8631327 FORWARD LENGTH=4824 Length=4824 Score = 219 bits (118), Expect = 2e-56 Identities = 191/224 (85%), Gaps = 13/224 (6%) Strand=Plus/Plus Query 1 ATGACTGAATTGGACA-ACGATGTGGTTGCTCTAATGAGTAAGCGAGTGCTTGAAATTGC 59 ||||||||||| || | |||||||||||||||||||||||||||||||| |||| ||||| Sbjct 866 ATGACTGAATTAGA-AGACGATGTGGTTGCTCTAATGAGTAAGCGAGTGTTTGATATTGC 924 Query 60 TGGCTGTTTGGGAAAGAC----A--GTTGACCTGAATGGAAAACAAGTACCAATTAAGTC 113 ||| |||||||| ||| | | ||||| |||||||| |||||| ||||| | ||||| Sbjct 925 TGGATGTTTGGGGAAGTCTGTCAAAGTTGAGCTGAATGGGAAACAAATACCAGTGAAGTC 984 Query 114 ATTCAGTGATTATGTTGATCTCTACTTAAGTGTC-GCCAATAAATCAAGGACTGAG---C 169 ||||| |||||||||||| || ||| |||||| | || |||||||| ||||| ||| | Sbjct 985 ATTCACTGATTATGTTGACCTATACCTAAGTG-CAGCTAATAAATCGAGGACGGAGGATC 1043 Query 170 CTCTCCCAAGGATGACTGAGAAAGTTAATGGTAGATGGGAGGTT 213 ||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 1044 CTCTCCCAAGGTTGACTGAGAAAGTTAATGATAGATGGGAGGTT 1087 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13873898724 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5