BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915669
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44990.1 | Symbols: | Glutathione S-transferase family prot... 1504 0.0
AT5G45020.1 | Symbols: | Glutathione S-transferase family prot... 636 0.0
> AT5G44990.1 | Symbols: | Glutathione S-transferase family protein
| chr5:18163158-18164768 FORWARD LENGTH=1117
Length=1117
Score = 1504 bits (814), Expect = 0.0
Identities = 950/1017 (93%), Gaps = 4/1017 (0%)
Strand=Plus/Plus
Query 12 TACATCAATGGCAAACGAGAAGT-CGGATTTCACTAGAACCGCAACATCATTCCGCAACT 70
|||| |||||| |||||| || | || |||| |||||||||||||||| ||||| ||||
Sbjct 70 TACACCAATGGAAAACGA-AAATCCGAATTTTGCTAGAACCGCAACATCGTTCCGAAACT 128
Query 71 TTGTTTCACAAA-AACTTGATTCTCAGTTTCCAGCAGAATCAGCAAGATACCATCTTTAT 129
|||||||| ||| | | ||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 129 TTGTTTCA-AAAGATCCTGACTCTCAGTTTCCAGCAGAATCAGGAAGATACCATCTTTAT 187
Query 130 ATCTCTTACGCTTGTCCATGGGCTTCTAGATGTCTTGCAATCTTGAAACTCAAAGGACTT 189
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 ATCTCTTATGCTTGTCCATGGGCTTCTAGATGTCTTGCAATCTTGAAACTCAAAGGACTT 247
Query 190 GACAAAGCAATAAGCTTTTCGTCTGTTCAACCACTTTTTaaaaaaaCCAAAGAAAGCGAC 249
|||||||| |||||||||||||||||||||||||||| | ||| |||||||||| ||||
Sbjct 248 GACAAAGCTATAAGCTTTTCGTCTGTTCAACCACTTTGGAGAAATACCAAAGAAAACGAC 307
Query 250 GAGCATATGGGATGGATTTTTCCAGATTCAGATACAGAGGTTCTTGGAGCTGAACGTGAT 309
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GAGCATATGGGATGGGTTTTTCCAGATTCAGATACAGAGGTTCTTGGAGCTGAACGTGAT 367
Query 310 CATGTTAATGGTGCGAAATCCGTAAGAGAACTATATGATATCGCTAGCTCCAACTACACG 369
||| | |||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 368 CATATCAATGGTGCGAAAAGCGTAAGAGAACTTTATGATATCGCTAGCTCCAACTACACG 427
Query 370 GGAAAATACACTGTTCCTGTTCTTTGGGATAAGAAGCTTAAGACTATAGTTAACAATGAG 429
|| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 GGCAAATATACGGTTCCTGTTCTTTGGGATAAGAAGCTTAAGACTATAGTTAACAATGAG 487
Query 430 AGTTCTGAGATACTCCGAATGTTCAATACCGAGTTCAATCATGTTGCAGAAAATCCTTCT 489
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 488 AGCTCTGAGATACTCCGAATGTTCAACACCGAGTTCAATCATGTTGCAGAAAACCCTTCT 547
Query 490 CTCGATCTTTACCCTCCCTATCTCCGAGCCATAATCGATGAGACCAACGAATGGATCCAC 549
||||||||||| || ||| | ||||||||||||||||||||||| ||||||||||| |||
Sbjct 548 CTCGATCTTTATCCACCCAACCTCCGAGCCATAATCGATGAGACTAACGAATGGATTCAC 607
Query 550 GATGAGATAAATAACGGTGTTTATAAATGTGGGTTTGCTAAAAATCAAGAAACCTATGAT 609
|||| |||||| |||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 608 GATGGGATAAACAACGGTGTTTATAAATGTGGGTTTGCTACAAATCAAGAAACTTATGAT 667
Query 610 GTGGCAGTGAAACAATTGTATGATGCATTGGACCGATGCGAAGAAATACTCAGAAACCAA 669
|||| |||||||| ||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 668 GTGGAAGTGAAACGATTGTATGAAGCATTGGACCGATGCGAAGACATACTCAGAAAACAA 727
Query 670 CGGTTTCTTTGTGGAAACATTTTGACTGAACCAGATATCCGATTATTCGTCACTCTCATA 729
||||||||||||||||||| | |||||||| ||||||||||||||||||||||| |||||
Sbjct 728 CGGTTTCTTTGTGGAAACACTCTGACTGAATCAGATATCCGATTATTCGTCACTGTCATA 787
Query 730 AGATTTGACGAGGCTTACGCGGTGATCTTCAAATGCGATAAAAGACTCGTAAGAGATTAT 789
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 788 AGATTTGACGAGGCTTACGCGGTGATCTTCAAATGCGATAAAAGACTCGTAAGAGAGTAT 847
Query 790 TATAATCTCTTTAACTACACGAAAGATATCTACCAAATCGCGGGACTGAGCAGTACAGTA 849
||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 848 TATCATCTCTTTAACTACACGAAAGATATCTACCAGATCGCGGGAATGAGCAGTACAGTA 907
Query 850 AAGATGGATCATATAAAGCAAAATTACTATGGAAGCTTTCCTTCTTTAAACCCTCTTGAG 909
|||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 908 AAGATGGATCATATCAAGCAAAACTACTATGGAAGCTTTCCTTCTATAAACCCTCTTGAG 967
Query 910 ATCATCGCTCCTGGACCAAACATTGATTACTCTTTGCCTCATGATCGACACAGATTCTCT 969
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 ATCATCGCTCATGGACCAAACATTGATTACTCTTTGCCTCATGATCGACACAGATTCTCT 1027
Query 970 TCAGAAAGTGACGATGCAAGACTTGAGTTACTTGAGAGTGCAAGTTTTGTTTGTGAA 1026
| |||||||||| || | |||||||||||| ||||||||||||||||||||||||||
Sbjct 1028 TTAGAAAGTGACTATACCAGACTTGAGTTATTTGAGAGTGCAAGTTTTGTTTGTGAA 1084
> AT5G45020.1 | Symbols: | Glutathione S-transferase family protein
| chr5:18168682-18170651 FORWARD LENGTH=1262
Length=1262
Score = 636 bits (344), Expect = 0.0
Identities = 756/952 (79%), Gaps = 39/952 (4%)
Strand=Plus/Plus
Query 46 AGAACCGCAACATCATTCCGCAACTTTGTTTCACAAAAACTTGATTCTCAGTTTCCAGCA 105
||||| ||| || ||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 170 AGAACAGCATCAACATTCCGCAACTTTGTTTCACAAGATCCTGATTCTCAGTTTCCAGCT 229
Query 106 GAATCAGCAAGATACCATCTTTATATCTCTTACGCTTGTCCATGGGCTTCTAGATGTCTT 165
||||||| ||||||||||||||| || ||||| |||||||||||||||| ||||||||||
Sbjct 230 GAATCAGGAAGATACCATCTTTACATATCTTATGCTTGTCCATGGGCTTGTAGATGTCTT 289
Query 166 GCAAT-CTTGAAA-CTCAAAGGACTTGACAAAGCAATAAGCTTTTCGTCTGTTCA-ACCA 222
| | ||| ||| ||||||||||||| ||||||| | ||| ||||| ||||| |||
Sbjct 290 TC-TTACTT-AAAGATCAAAGGACTTGATGAAGCAATCACCTTCTCGTCGGTTCATGCCA 347
Query 223 CTTTTTaaaaaaaCCAAAGAAAGC-GACGAGCATATG-GGATGGATTTTTCCAGATTCAG 280
||| || |||||| |||| | || || |||| | |||||| |||| || ||||| |
Sbjct 348 -TTTGGGGAAGAACCAAGGAAA-CTGATGATCATA-GAGGATGGGTTTTCCCGGATTCGG 404
Query 281 ATACAGAGGTTCTTGGAGCTGAACGTGATC-ATGTTAATGGTGCGAAATCCGTAAGAGAA 339
|||| ||| | | ||||||||| | ||| | || |||||||||| ||| || ||||||
Sbjct 405 ATACCGAGCTCCCTGGAGCTGAGCCTGA-CTATCTTAATGGTGCCAAAAGTGTGAGAGAA 463
Query 340 CTATATGATATCGCTAGCTCC-AACTA-CACGGGAAAATACACTGTTCCTGTTCTTTGGG 397
|| || || || |||||| || ||||| | ||| || ||||||||||||||||||||||
Sbjct 464 CTCTACGAGATTGCTAGC-CCAAACTATGAAGGG-AAGTACACTGTTCCTGTTCTTTGGG 521
Query 398 ATAAGAAGCTTAAGACTATAGTTAACAATGAGAGTTCTGAGATACTCCGAATGTTCAATA 457
||||||||||||||||| | ||||||||||||||||| |||||| |||| |||||||| |
Sbjct 522 ATAAGAAGCTTAAGACTGTTGTTAACAATGAGAGTTCAGAGATAATCCGGATGTTCAACA 581
Query 458 CCGAGTTCAATCATGTTGCAGAAAATCCT-TCTCTCGATCTTTACCCTCC-CTATCTCCG 515
| ||||||||| | |||| ||||| || || || || ||||| ||| | | ||||| |
Sbjct 582 CTGAGTTCAATGGTATTGC-GAAAACCCCGTCACTTGACCTTTATCCTTCTC-ATCTCAG 639
Query 516 AGCCATAATCGATGAGACCAACGAATGGATCCACGATGAGA-TAAATAACGGTGTTTATA 574
|| | ||||| | ||||| |||| |||| | | | | || |||| |||||||||||||
Sbjct 640 AGACGTAATCAACGAGACTAACGGATGGGTTTTCAACG-GAATAAACAACGGTGTTTATA 698
Query 575 AATGTGGGTTTGCTAA--AAATCAAGAAACCTATGATGTGGCAGTGAAACAATTGTATGA 632
||||||||||||| || ||| |||||| ||||| ||| ||||||||| || || |||||
Sbjct 699 AATGTGGGTTTGC-AAGGAAA-CAAGAACCCTATAATGAGGCAGTGAACCAGTTATATGA 756
Query 633 TGCATTGGACCGATGCGAAGAAATACTCAGAAACCAACGGTTTCTT-TGTGGAAACATTT 691
||| | || |||| || ||| ||||| |||| ||||| | | | || ||||||| ||
Sbjct 757 AGCAGTAGATAGATGTGAGGAAGTACTCGGAAAACAACGATA-CATCTGCGGAAACACTT 815
Query 692 TGACTGAACCAGATATCCGATTATTCGTCACTCTCATAAGATTTGACGAGGCTTACGCGG 751
| |||||| ||||||||||||||||||||||||||||||||||||| |||| ||| || |
Sbjct 816 TCACTGAAGCAGATATCCGATTATTCGTCACTCTCATAAGATTTGATGAGGTTTATGCAG 875
Query 752 TG-ATCTTCAAATGCGATAAAAGACTCGTAAGAGATTATTATAATCTCTTTAACTACACG 810
| | |||||||||| | || |||||| || | || || ||| |||| |||||||
Sbjct 876 TTCA-CTTCAAATGCAACAAGAGACTCTTACGGGAGTACCCGAATATCTTCAACTACATA 934
Query 811 AAAGATATCTACCAAAT-CGCGGGACTGAGCAGTACAGTAAAGATGGATCATATAAAGCA 869
||||| || |||||||| | ||| | |||| || || ||||| ||||| || || |||||
Sbjct 935 AAAGACATTTACCAAATACACGGCA-TGAGTAGCACCGTAAACATGGAACACATTAAGCA 993
Query 870 AAATTACTATGGAAGCTTTCCTTCTTTAAACCCTCTT-GAGATCATCGCTC-CTGGACCA 927
| ||||||| |||||| ||| | ||||||| || | ||||||| ||| | || ||
Sbjct 994 ACATTACTACGGAAGCCACCCTACGATAAACCCA-TTCGGGATCATCCCTCAC-GGCCCC 1051
Query 928 AACATTGATTACTCTTTGCCTCATGATCGAC-ACAGATTCTCTTCA-GAAAG 977
|| || || ||||||| |||||||||||| | |||||||||| || |||||
Sbjct 1052 AATATCGACTACTCTTCGCCTCATGATCG-CGACAGATTCTCCTCGTGAAAG 1102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5