BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915671
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44980.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 521 3e-147
AT5G44940.1 | Symbols: | F-box/RNI-like superfamily protein | ... 305 3e-82
AT5G44960.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 303 1e-81
> AT5G44980.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:18160290-18162264 FORWARD LENGTH=1592
Length=1592
Score = 521 bits (282), Expect = 3e-147
Identities = 565/697 (81%), Gaps = 37/697 (5%)
Strand=Plus/Plus
Query 1 ATGGAGTTGATCAATAGAGTGGTTGATCTTGGCA-TTCAACATTTGGAGGTTTTTAAGTA 59
|||||||||||| || | ||||||||| ||| | |||| |||||| | ||||||| | |
Sbjct 364 ATGGAGTTGATCGGTACACTGGTTGATCATGG-ACTTCAGCATTTGTATGTTTTTATGCA 422
Query 60 TCCTTGTAGCGCATA--TGGTTTCATGTGTCAAAACATTTACAAGAGCAAGACATTGGTC 117
| ||| | | || | || ||||| ||||||||||||||||||||||||||||||||
Sbjct 423 TACTT-TTG-ACAGAGTTGATTTCAAACGTCAAAACATTTACAAGAGCAAGACATTGGTC 480
Query 118 TCTTTGAACCTTGTA-AATATAGAGTTAAAGAATCCAGAGTTTGTGGTTTCTCTACCTTG 176
|||||||| ||| | || |||||||||||||| |||| ||||| ||||||||||||||
Sbjct 481 TCTTTGAAGCTT-CATAACGTAGAGTTAAAGAATTCAGACTTTGTTGTTTCTCTACCTTG 539
Query 177 TCTCAAAATCATGCATTTATTTAACGTTTGTCACGGTGAGGATGGTCCTTTGGTTGTGGA 236
|||||| ||| || | | || ||||||||||||||||||||||||||||||||||
Sbjct 540 TCTCAAGATCTTGAAACTGGAGAATATTTGTCACGGTGAGGATGGTCCTTTGGTTGTGGA 599
Query 237 GAGGCTCATCTCAGGATGTCCTGTTCTTGAAGATCTTAAGCTGATTAGGCCTTTTAACAT 296
|| |||||||||||||||| ||||||||||||||||| ||||||||||||||||| | ||
Sbjct 600 GAAGCTCATCTCAGGATGTTCTGTTCTTGAAGATCTTGAGCTGATTAGGCCTTTTGATAT 659
Query 297 TTGGACTCAAAAAGTTCTCAAAAACTTTAAGCTGTTTCTGCATGTGAGGTCTCAGACTCT 356
| |||| || |||| | | | || ||| |||||| |||||| |||||||||||
Sbjct 660 TAGGACACATAAAG-T-T------C-TT---CTGCTTCTGCGTGTGAGCTCTCAGACTCT 707
Query 357 GAAAAGCCTTGGTTTATATTTTGCTATGAATAGGGGT-GATACAGATTTTTCTGTTGAGA 415
||||||| || ||| ||||||| || ||| || | | |||||||||||| |||||||
Sbjct 708 GAAAAGCTTTACCTTACATTTTGCGATCTATAAGGATCG-TACAGATTTTTCAGTTGAGA 766
Query 416 TTGATGCTCCAAGACTCAAGTATATGAGTGTTGAACAGAGTCAAACGGATAGCATTGCGG 475
||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| ||
Sbjct 767 TTGATGCTCCAAGACTCAAGTATATGACTGTTGAACAGAGTCAATCTGATAGCATTGTGG 826
Query 476 TAAAGAACTTGAGTTCCTTGTTCAGGATTGACATTCGTA-TCAGAGATCATCCATCGAGA 534
|||||||| |||||||||||||||| || |||||| ||| | | | | |||| | ||||
Sbjct 827 TAAAGAACCTGAGTTCCTTGTTCAGCATCGACATTGGTACTAA-ATTTAATCCTTTGAGA 885
Query 535 CCA-GATGAT-TA----T----AATATTTTCTGTGATTTTTTAACCGGGATATCTAGTGT 584
| | || ||| || | ||| |||||| ||||||||||||||||||||||||||
Sbjct 886 C-ATGAGGATCTAAGGATGCGTAATGTTTTCTACGATTTTTTAACCGGGATATCTAGTGT 944
Query 585 AAGACATATGATAATCTACATT-TGGAGTCTAGAGAGGCTTTATCGTTCTTCGAAACTTA 643
|| ||||||||| |||| || |||||||| ||||| ||| || || ||| ||||
Sbjct 945 AAAACATATGATCATCTGT-TTGTGGAGTCTCCAGAGGTTTTCTCCTTATTCAAAACCCG 1003
Query 644 AACCGATTCCTAAATTCCATAACTTGTACCATTTAAA 680
|| |||||| |||||||| |||||||| ||||||||
Sbjct 1004 GACTGATTCCCAAATTCCAGAACTTGTATCATTTAAA 1040
> AT5G44940.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:18149369-18150892 FORWARD LENGTH=1134
Length=1134
Score = 305 bits (165), Expect = 3e-82
Identities = 252/294 (86%), Gaps = 6/294 (2%)
Strand=Plus/Plus
Query 1 ATGGAGTTGATCAATAGAGTGGTTGATCTTGGCATTCAACATTTGGAGGTTTTTAAGTAT 60
|||||||||||| || | ||||||||| ||| |||||||||||| | |||| || | ||
Sbjct 295 ATGGAGTTGATCGGTACACTGGTTGATCGTGGAATTCAACATTTGTATGTTTATATGCAT 354
Query 61 CCTTGTAGC-GCA-TATGGTTTCATGTGTCAAAACATTTACAAGAGCAAGACATTGGTCT 118
|||||| | | | | || |||||| ||||||||||||||||||| |||||||||||||
Sbjct 355 ACTTGTAACAG-AGT-TGATTTCATACGTCAAAACATTTACAAGAGTAAGACATTGGTCT 412
Query 119 CTTTGAACCTTGTA-AATATAGAGTTAAAGAATCCAGAGTTTGTGGTTTCTCTACCTTGT 177
||||||| ||| || || ||||||||||||||||||||||||| |||||||||||||||
Sbjct 413 CTTTGAAGCTT-TATAACGTAGAGTTAAAGAATCCAGAGTTTGTTGTTTCTCTACCTTGT 471
Query 178 CTCAAAATCATGCATTTATTTAACGTTTGTCACGGTGAGGATGGTCCTTTGGTTGTGGAG 237
||||| ||| || | | || ||| |||||||||||||||||||||||| ||||||
Sbjct 472 CTCAAGATCTTGAAACTGGAGAATATTTTTCACGGTGAGGATGGTCCTTTGGTCGTGGAG 531
Query 238 AGGCTCATCTCAGGATGTCCTGTTCTTGAAGATCTTAAGCTGATTAGGCCTTTT 291
| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 532 AAGCTCATCTCAGGATGTCCTGTTCTTGAAGATCTTGAGCTGATTAGGCCTTTT 585
> AT5G44960.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:18153852-18155391 FORWARD LENGTH=1251
Length=1251
Score = 303 bits (164), Expect = 1e-81
Identities = 263/310 (85%), Gaps = 10/310 (3%)
Strand=Plus/Plus
Query 1 ATGGAGTTGATCAATAGAGTGGTTGATCT-TGGCATTCAACATTTGGAGGTTTTTAAGTA 59
|||||||||||| || |||||||||| | ||| |||||||||||| | |||| || | |
Sbjct 289 ATGGAGTTGATCGGTACAGTGGTTGAT-TGTGGAATTCAACATTTGTATGTTTATATGCA 347
Query 60 TCCTTGT-AGCGCA-TATGGTTTCATGTGTCAAAACATTTACAAGAGCAAGACATTGGTC 117
| ||||| | | | | || |||||| ||||||||||||||||||||||||||||||||
Sbjct 348 TACTTGTAATAG-AGT-TGATTTCATACGTCAAAACATTTACAAGAGCAAGACATTGGTC 405
Query 118 TCTTTGAACCTTGTA-AATATAGAGTTAAAGAATCCAGAGTTTGTGGTTTCTCTACCTTG 176
|||||||| ||| || || ||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 406 TCTTTGAAGCTT-TATAACGTAGAGTTGAAGAATCCAGACTTTGTTGTTTCTCTACCTTG 464
Query 177 TCTCAAAATCATGCATTT-ATTTAACGTTTGTCACGGTGAGGATGGTCCTTTGGTTGTGG 235
|||||| ||| || | | || || ||||| ||||||||||||| |||||||||||||
Sbjct 465 TCTCAAGATCTTGAAACTGATGAAAA-TTTGTTACGGTGAGGATGGCCCTTTGGTTGTGG 523
Query 236 AGAGGCTCATCTCAGGATGTCCTGTTCTTGAAGATCTTAAGCTGATTAGGCCTTTTAACA 295
||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||| | |
Sbjct 524 AGAAGCTCATCTCAGGATGTCCTGTTCTTGAAGATCTTGAGCTGATTAAGCCTTTTGATA 583
Query 296 TTTGGACTCA 305
||| ||||||
Sbjct 584 TTTTGACTCA 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39283102954
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5