BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915730
Length=312
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44578.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 390 3e-108
> AT5G44578.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 15 Blast hits to 15
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr5:17977177-17978638 FORWARD LENGTH=517
Length=517
Score = 390 bits (211), Expect = 3e-108
Identities = 267/295 (91%), Gaps = 0/295 (0%)
Strand=Plus/Plus
Query 18 TTCAAAATTGAGTCAAGTGTTCATTGTGGTTCTTCTTTGCATCTTCATTTATCGTACCGA 77
||||||||||| ||||||||||||||||| |||||| || |||||||| |||||||||||
Sbjct 64 TTCAAAATTGACTCAAGTGTTCATTGTGGCTCTTCTCTGTATCTTCATATATCGTACCGA 123
Query 78 CTCAGCTATTTCTTCTCATCATGAACAACTTCCAATTTCCGGGAGAAGAATGATGGCGAA 137
|||||||| |||||||||| |||||||||| || || ||||||| ||||||||||||||
Sbjct 124 ATCAGCTATGTCTTCTCATCGTGAACAACTTTCACTTACCGGGAGGAGAATGATGGCGAA 183
Query 138 CACTCCGTATCCGTATGGTGGCATATATGTGAAACCACCACCCTCAAAAAGTAAAGGTAG 197
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 184 CATTCCGTATCCGTATGGTGGCATATATGTGAAACCACCACCCTTAAAAAGTAAAGATAG 243
Query 198 TTATCTGAAAGTGAAGAGATTGGAGACATATTATAAGCCAAATAGTGAGATAGGTACAGG 257
| ||| ||||| ||||||| |||||| |||||||||||||||||||| ||||| || ||
Sbjct 244 TAATCAGAAAGGGAAGAGAGGGGAGACTTATTATAAGCCAAATAGTGAAATAGGCACTGG 303
Query 258 ACCATCACATAGTGGACATGGTGGTAGCACCATTGATCAAGTTTCATCTCCTTAG 312
||||||||||||||||||||||||||||| |||||| || ||||| |||||||||
Sbjct 304 ACCATCACATAGTGGACATGGTGGTAGCAGCATTGAACATGTTTCCTCTCCTTAG 358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14477111712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5