BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915831
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43980.1 | Symbols: PDLP1, PDLP1A | plasmodesmata-located pr... 1293 0.0
> AT5G43980.1 | Symbols: PDLP1, PDLP1A | plasmodesmata-located
protein 1 | chr5:17694680-17696622 REVERSE LENGTH=1213
Length=1213
Score = 1293 bits (700), Expect = 0.0
Identities = 862/935 (92%), Gaps = 32/935 (3%)
Strand=Plus/Plus
Query 1 ATGAAACTCATCTATCAATTCTTCATCTTCTGGTTCTTCTTACCATTCTTTGTAATCTCC 60
|||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 165 ATGAAACTCACCTATCAATTCTTCATCTTCTGGTTCTTTTTACCATTCTTTGCAATCTCC 224
Query 61 GGTGATGGTGATAATAAAAATCTCATCTTTAAAGGTTGTGCTAATCAGAAATTC-CCAGA 119
||||||| |||| |||||||||| ||||||||||||||||| ||||||||| || |||||
Sbjct 225 GGTGATGATGATTATAAAAATCTGATCTTTAAAGGTTGTGCAAATCAGAAA-TCTCCAGA 283
Query 120 CCCAACTGGTGTTTTCTCTCAGAATCTCAAAAACTTATTCACTTCCTTAGTTTCTCAATC 179
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 284 CCCAACTGGTGTTTTCTCTCAGAATCTCAAAAACTTATTCACTTCTTTAGTTTCTCAATC 343
Query 180 AGCACAAAGCTCTTACGCTTCTGTAACCTCCGGAACTGATAACACAACCGCCGTGATCGG 239
| |||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 344 ATCACAAAGCTCTTTCGCTTCCGTAACCTCCGGAACTGATAACACCACCGCCGTGATCGG 403
Query 240 TGTTTTTCAGTGCCGTGGCGATCTCCACAACGCTGAGTGTTACGATTGCGTCTCCAAAAT 299
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 404 TGTTTTTCAGTGCCGTGGCGATCTCCAAAACGCTCAGTGTTACGATTGCGTCTCCAAAAT 463
Query 300 CCCTAAACTCGTTTCTAAACTCTGCGGTGGTGGCGGAGATGACGGTAATGTGGTGGTGGC 359
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
Sbjct 464 CCCTAAACTCGTTTCTAAACTCTGCGGTGGCGGCAGAGATGACGGTAATGTGGTGG---C 520
Query 360 GGCTCGTGTGCAGCTTGCCGGATGTTATCTCCGGTATGAAA-TCTCAGGATTCCGACAAA 418
||||||||| || || || ||||||||| |||||||||| | | ||||||||||| ||||
Sbjct 521 GGCTCGTGTTCACCTCGCTGGATGTTATATCCGGTATGAGAGT-TCAGGATTCCGGCAAA 579
Query 419 CTTCTGGTACGGAGATGTTGTTCCGTATCTGCGGGAAAAAAGATTCCAACGATCCTGGGT 478
|||| ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||
Sbjct 580 CTTCCGGTACGGAGATGTTGTTCCGTGTCTGTGGGAAAAAAGATTCTAACGATCCTGGGT 639
Query 479 TTGTAGG-AAAGAGAGAGACGGCGTTTGGTATGGCGGAGAACGGTGTGAAAAGTGGATCA 537
|||| || ||| || ||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 640 TTGTCGGGAAA-AGGGAGACGGCGTTTGGTATGGCGGAGAACGGCGTGAAAACTGGATCA 698
Query 538 TCCGGTGGCGGTGGTGCTGGCGGTGGTGGTGGCGGAGGAGGGTTTTACGCGGGGCAATAT 597
|||||||| ||||| | ||| ||||||||| |||||||||||||| |||
Sbjct 699 TCCGGTGG---TGGTG--G----TGG------CGGAGGAGGTTTTTACGCGGGGCAGTAT 743
Query 598 GAGTCGGTGTACGTGTTGGGACAGTGTGAGGGTAGTTTGGGAAATTCAGATTGTGGGGAA 657
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 GAGTCGGTGTATGTGTTGGGACAGTGTGAGGGTAGTTTGGGAAATTCAGATTGTGGGGAA 803
Query 658 TGTGTGAAAGATGGATTTGAGAAAGCAAAGAGTGAGTGTGGAGATTCGAACTCGGGACAA 717
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 804 TGTGTGAAAGATGGATTTGAGAAAGCAAAGAGTGAGTGTGGAGAGTCGAACTCGGGACAA 863
Query 718 GTTTATCTTCTTAAGTGCTTCGTTAGCTATAGTTACTACTCTCATGGTGTTCCCAACAAC 777
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 GTTTACCTTCAGAAGTGCTTCGTTAGCTATAGTTACTACTCTCATGGTGTTCCCAACA-- 921
Query 778 ATAGAACCAATT-TCAGGTGGAGAGAAGAGACAACACACAGAAAGGACGATAGCTTTGGC 836
|||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 -TAGAGCCA-TTATCAGGTGGAGAGAAGAGACAACACACAGAAAGGACGATAGCTTTGGC 979
Query 837 GGTGGGAGGAgtttttgttttagggtttgtgattgtttgcttgttggttttgAGATCTGC 896
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 980 GGTGGGAGGAGTTTTTGTTTTAGGGTTTGTGATTGTTTGTTTGTTGGTTTTGAGGTCTGC 1039
Query 897 CATGAAGAAGAAGAGTAA-A--TATGATGCTTATT 928
|||||||||||||||||| | |||||||||||||
Sbjct 1040 CATGAAGAAGAAGAGTAATAAATATGATGCTTATT 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45461903035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5