BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg915863 Length=552 Score E Sequences producing significant alignments: (Bits) Value AT5G43750.1 | Symbols: NDH18 | NAD(P)H dehydrogenase 18 | chr5:... 592 2e-168 > AT5G43750.1 | Symbols: NDH18 | NAD(P)H dehydrogenase 18 | chr5:17579966-17581222 REVERSE LENGTH=850 Length=850 Score = 592 bits (320), Expect = 2e-168 Identities = 384/415 (93%), Gaps = 4/415 (1%) Strand=Plus/Plus Query 5 aaaaaaTGGCAACGGTCATGATTCTTTCTCCCAAATCGATCCCAAAGATCA-TAGATTCG 63 |||||||||||||||||| |||||| || ||||||||||| |||||| ||| | ||||| Sbjct 73 AAAAAATGGCAACGGTCACGATTCTCTCACCCAAATCGATTCCAAAGGTCACT-GATTCC 131 Query 64 AAGTTTGGAGTTAAGGTTCCTGATCAGACCGTCAATGTCGTGAAATGCGGCAATTCCGGC 123 || || |||| || |||| ||||||||| |||||||||||| ||||||||||| |||||| Sbjct 132 AAATTCGGAGCTAGGGTTTCTGATCAGATCGTCAATGTCGTAAAATGCGGCAAATCCGGC 191 Query 124 CGGAGATTGAGGTTAGCTAAGCTGGTTTCAGCTGCTGGATTGTCACAGATTGAACCAGAT 183 |||||||||| |||||| |||||||| ||||| ||||||||||||||||| |||||||| Sbjct 192 CGGAGATTGAAGTTAGCGAAGCTGGTCTCAGCGGCTGGATTGTCACAGATCGAACCAGAC 251 Query 184 ATCAACGAAGACCCGATTGGTCAATTTGAGATTAATAGCATTGAAATGGAAGATTTCAAG 243 |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 252 ATCAACGAAGACCCGATTGGTCAATTCGAGACTAATAGCATTGAAATGGAAGATTTCAAG 311 Query 244 TATGGATATTACGATGGAGCTCATACTTACTATGAAGGAGAAGTTCAAAAGGGAACATTT 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 312 TATGGATATTACGATGGAGCTCATACTTACTATGAAGGAGAAGTTCAAAAGGGAACATTT 371 Query 304 TGGGGAGCAATTGCTGATGACATTGCTGCTGTGGATCAAACAAATGGGTTTCAAGGTTTA 363 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 372 TGGGGAGCAATTGCTGATGACATTGCTGCTGTGGATCAAACTAATGGGTTTCAAGGTTTG 431 Query 364 ATCTCTTGCCTGTTTCTTCCTGCTATAGCTGCA-GGGATGTATTTTGATGCTCCG 417 |||||||| |||||||||||||||||||| | ||||||||||||||||||||| Sbjct 432 ATCTCTTGTATGTTTCTTCCTGCTATAGCT-CTTGGGATGTATTTTGATGCTCCG 485 Score = 220 bits (119), Expect = 9e-57 Identities = 133/140 (95%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 413 CTCCGATATACAAATTGGAGAGAGGAGCTCGCGATAAGCTCATTAATGACTACAACACAA 472 ||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 577 CTCAGATATACAAATTGGAGAGAGGAGCTCGTGACAAGCTCATTAATGACTACAACACAA 636 Query 473 TGAGCATCTGGGACTTTAATGACAAGTATGGTGATGTATGGGATTTCACAATTGAGAAAG 532 ||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 637 TGAGCATTTGGGACTTTAATGACAAATATGGTGATGTATGGGATTTCACCATTGAGAAAG 696 Query 533 ACGATATCGCCACACGATAA 552 | |||||||||||||||||| Sbjct 697 ATGATATCGCCACACGATAA 716 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26473395469 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5