BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915863

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G43750.1 | Symbols: NDH18 | NAD(P)H dehydrogenase 18 | chr5:...   592    2e-168


> AT5G43750.1 | Symbols: NDH18 | NAD(P)H dehydrogenase 18 | chr5:17579966-17581222 
REVERSE LENGTH=850
Length=850

 Score =  592 bits (320),  Expect = 2e-168
 Identities = 384/415 (93%), Gaps = 4/415 (1%)
 Strand=Plus/Plus

Query  5    aaaaaaTGGCAACGGTCATGATTCTTTCTCCCAAATCGATCCCAAAGATCA-TAGATTCG  63
            |||||||||||||||||| |||||| || ||||||||||| |||||| ||| | ||||| 
Sbjct  73   AAAAAATGGCAACGGTCACGATTCTCTCACCCAAATCGATTCCAAAGGTCACT-GATTCC  131

Query  64   AAGTTTGGAGTTAAGGTTCCTGATCAGACCGTCAATGTCGTGAAATGCGGCAATTCCGGC  123
            || || |||| || |||| ||||||||| |||||||||||| ||||||||||| ||||||
Sbjct  132  AAATTCGGAGCTAGGGTTTCTGATCAGATCGTCAATGTCGTAAAATGCGGCAAATCCGGC  191

Query  124  CGGAGATTGAGGTTAGCTAAGCTGGTTTCAGCTGCTGGATTGTCACAGATTGAACCAGAT  183
            |||||||||| |||||| |||||||| ||||| ||||||||||||||||| |||||||| 
Sbjct  192  CGGAGATTGAAGTTAGCGAAGCTGGTCTCAGCGGCTGGATTGTCACAGATCGAACCAGAC  251

Query  184  ATCAACGAAGACCCGATTGGTCAATTTGAGATTAATAGCATTGAAATGGAAGATTTCAAG  243
            |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct  252  ATCAACGAAGACCCGATTGGTCAATTCGAGACTAATAGCATTGAAATGGAAGATTTCAAG  311

Query  244  TATGGATATTACGATGGAGCTCATACTTACTATGAAGGAGAAGTTCAAAAGGGAACATTT  303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  312  TATGGATATTACGATGGAGCTCATACTTACTATGAAGGAGAAGTTCAAAAGGGAACATTT  371

Query  304  TGGGGAGCAATTGCTGATGACATTGCTGCTGTGGATCAAACAAATGGGTTTCAAGGTTTA  363
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  372  TGGGGAGCAATTGCTGATGACATTGCTGCTGTGGATCAAACTAATGGGTTTCAAGGTTTG  431

Query  364  ATCTCTTGCCTGTTTCTTCCTGCTATAGCTGCA-GGGATGTATTTTGATGCTCCG  417
            ||||||||  |||||||||||||||||||| |  |||||||||||||||||||||
Sbjct  432  ATCTCTTGTATGTTTCTTCCTGCTATAGCT-CTTGGGATGTATTTTGATGCTCCG  485


 Score =  220 bits (119),  Expect = 9e-57
 Identities = 133/140 (95%), Gaps = 0/140 (0%)
 Strand=Plus/Plus

Query  413  CTCCGATATACAAATTGGAGAGAGGAGCTCGCGATAAGCTCATTAATGACTACAACACAA  472
            ||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct  577  CTCAGATATACAAATTGGAGAGAGGAGCTCGTGACAAGCTCATTAATGACTACAACACAA  636

Query  473  TGAGCATCTGGGACTTTAATGACAAGTATGGTGATGTATGGGATTTCACAATTGAGAAAG  532
            ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct  637  TGAGCATTTGGGACTTTAATGACAAATATGGTGATGTATGGGATTTCACCATTGAGAAAG  696

Query  533  ACGATATCGCCACACGATAA  552
            | ||||||||||||||||||
Sbjct  697  ATGATATCGCCACACGATAA  716



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26473395469


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5