BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg916060 Length=825 Score E Sequences producing significant alignments: (Bits) Value AT5G42670.1 | Symbols: | Agenet domain-containing protein | ch... 1014 0.0 > AT5G42670.1 | Symbols: | Agenet domain-containing protein | chr5:17108262-17110761 FORWARD LENGTH=1202 Length=1202 Score = 1014 bits (549), Expect = 0.0 Identities = 740/830 (89%), Gaps = 22/830 (3%) Strand=Plus/Plus Query 1 ATGACTCAAATCAATCTACCATTTGAAGTTGGTCAAACTGTAGAATT-AAGATCTTTT-A 58 |||| | |||| ||||||||||||||||||||||||||||||||||| || ||||||| | Sbjct 73 ATGAGTGAAATGAATCTACCATTTGAAGTTGGTCAAACTGTAGAATTGAA-ATCTTTTGA 131 Query 59 TATCGGGTTATCGTGGTGCTTGGTTTCGATGCAAGAAAAGGAGAGCATTATTCTATGATG 118 || ||||| |||||||||||||||||| ||||||||||||| ||||||||||| ||||| Sbjct 132 -ATTGGGTTTTCGTGGTGCTTGGTTTCGTTGCAAGAAAAGGAAAGCATTATTCTTTGATG 190 Query 119 TGGAGTATCTTGATTATCCCGGAG-AGAGTATACATACAACAAAAGTATTTCAACAACTC 177 | |||||| |||||||||| |||| || | |||||| ||||||||||||||||||||||| Sbjct 191 TTGAGTATATTGATTATCCAGGAGAAG-GGATACATTCAACAAAAGTATTTCAACAACTC 249 Query 178 GAAGGTGGGAGTGAGAAACACCTAATGATTCGACCTGTATATCCACGACAATGCCATGAA 237 ||||| || | |||||| | | |||||||||||||||||||| | |||||| | |||| Sbjct 250 GAAGGCGGAAACGAGAAATGCTTGATGATTCGACCTGTATATCCGCCACAATGTCGTGAA 309 Query 238 AATGAAGTCCTTAACAAGGAGGGTGGTGGTCTAGAAGAAGCTGC-TGTTGTTCATGATGA 296 ||||||| | | || ||| ||||||||||||||| | ||||||||||| | Sbjct 310 AATGAAG----T--C---GA---TGGCGGTCTAGAAGAAGCT-CTTGTTGTTCATGGTTC 356 Query 297 TTGGAAGGTTGGTGATTTGGTCGATTGGTGGGAAGCCTATTGTTATTGGTCTGGGACGGT 356 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 357 TTGGAAGGTTGGTGATTTGGTTGATTGGTGGGAAGCCTATTGTTATTGGTCTGGGACTGT 416 Query 357 TCTGGAAGTGAAAGAAAATGGATCAGTACAGATTGAATTGTTGGCTCCACCACATGGCGA 416 |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 417 TCTGGAAGTGAAAGAAAATGAATCAGTACAGATTGAATTGTTGGCTCCACCATATGGCGA 476 Query 417 AGGGAGTATCTATGACGC-CATGTCTAAGGATTTGCGACCATCATTGGAATGGTCACTTG 475 |||||||| |||||| || || |||||||||||||||||||||||||||||||||||||| Sbjct 477 AGGGAGTAGCTATGAGGCTCA-GTCTAAGGATTTGCGACCATCATTGGAATGGTCACTTG 535 Query 476 AAGATGGTTGGACTGTACCTTTTTCTAAGGATGGGGAGAAGAGGCAATGTGCTAAGCTAA 535 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 536 AAGATGGTTGGACTGTACCTTTTTCTAAGGATGGGGAAAAGAGGCAATGTGCTAAGCTAA 595 Query 536 TGAAACATTTGAATGAAGATCAAGTGAATGAGGCCGAATCAATGgaagaagaagagcaga 595 ||||||| || |||||||||||||||| ||| || ||||| |||||||||||| |||||| Sbjct 596 TGAAACAGTTAAATGAAGATCAAGTGAGTGAAGCTGAATCTATGGAAGAAGAAAAGCAGA 655 Query 596 gtggagctgaacctagagaggaagaaaagcagagacccacagagaagTTGAAAAAAGATG 655 | ||||| ||||||| ||| ||||||||||||||||| ||||| |||||||||| |||| Sbjct 656 GAGGAGCCGAACCTAAAGAAGAAGAAAAGCAGAGACCGACAGAAAAGTTGAAAAGCGATG 715 Query 656 GAGCTCTTCGGTTGAACATCATGGAATCAGAGTCTGTCGAAGCTGCTGTCTTGGACTTGG 715 |||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 716 AAGCTCTTCAGTTGAACATCATGGATTCAGAGTCTATCGAAGCTGCTGTCTTGGACTTGG 775 Query 716 AAGAGCTGATTGTTCGTTTCGAGTGGATGAAAGGCATTTTAGCTCCTGATTCTTCAGAAA 775 ||||| |||||||||||||||||||| |||||| ||| ||| ||||||||||||| |||| Sbjct 776 AAGAGATGATTGTTCGTTTCGAGTGGCTGAAAGACATCTTAACTCCTGATTCTTCGGAAA 835 Query 776 AATCTTCCTGGATATACGAGCCTTACCGTCCATCCTCCTCAAGAATCTGA 825 || |||||||||||||||| ||| | |||||||||||||||||| ||| Sbjct 836 AAAATTCCTGGATATACGAGGATTATCATCCATCCTCCTCAAGAATGTGA 885 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40187317600 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5