BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916113
Length=270
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24200.2 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 414 2e-115
> AT3G24200.2 | Symbols: | FAD/NAD(P)-binding oxidoreductase family
protein | chr3:8747831-8751369 REVERSE LENGTH=1991
Length=1991
Score = 414 bits (224), Expect = 2e-115
Identities = 248/259 (96%), Gaps = 4/259 (2%)
Strand=Plus/Plus
Query 7 GGCCTTGGATATACAAGATACAATGCTAATGATGTACATCAAGATGTTTTGGGGTGTGTA 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 GGCCTTGGATATACAAGATACAATGCTAATGATGTACATCAAGATGTTTTGGGGTGTGTA 698
Query 67 GTGGAGAATAAAGTTCTTCAGAGTTCTCAGCTATCTTGTGTACATGAATCAGATCTCCAG 126
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 699 GTGGAGAATAAAGTTCTTCAGAGTTCTCAGCTATCTTGTGTACAGGAATCAGATCTCCAG 758
Query 127 AAGACTGTTTA-CCCTGCGAGGTTAAACT-CGATGGATATGCTACCTAGCTCTTCGTTGA 184
||||||||||| ||| ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 759 AAGACTGTTTATCCC-GCGAGGTTAAA-TGCGATGGATATGCTACCTAGCTCTTCGTTGA 816
Query 185 CAGGTCTTGGTAAAGTACCATCCGCAACAGATTTGTTTATGCGAGGACGCCTTGCTAAGC 244
||||||||||| ||||||||||| ||||||| ||||| ||||||||||||||||||||||
Sbjct 817 CAGGTCTTGGTGAAGTACCATCCACAACAGACTTGTTCATGCGAGGACGCCTTGCTAAGC 876
Query 245 TGGAGCTAAGTGATGCAAA 263
|||||||||| |||| |||
Sbjct 877 TGGAGCTAAGCGATGGAAA 895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12365866254
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5