BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916495
Length=636
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49230.1 | Symbols: HRB1 | Drought-responsive family protein... 942 0.0
> AT5G49230.1 | Symbols: HRB1 | Drought-responsive family protein
| chr5:19958873-19960544 REVERSE LENGTH=933
Length=933
Score = 942 bits (510), Expect = 0.0
Identities = 598/640 (93%), Gaps = 8/640 (1%)
Strand=Plus/Plus
Query 1 ATGGATTCGAATTCATGGATCAATTGTCCTCCC-GTGTTTTCATCATCGTCTTCTTCACG 59
||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||
Sbjct 123 ATGGATTCGAATTCATGGATCAATTGTCC-CCCTGTGTTTTCATCATCGCCTTCTTCACG 181
Query 60 GCGTTACCAATCTCGATCAGATTTGTATTTGGGAGATGTTGAAGGAGAAGACGATTTGAA 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 CCGTTACCAATCTCGATCAGATTTGTATTTGGGAGATGTTGAAGGAGAAGACGATTTGAA 241
Query 120 AGCAGAGTTTATGTGTCCGTTTTGTGCAGATGAGTTTGATATTGTTGGTCTTTGTTGTCA 179
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 242 AGCTGAGTTTATGTGTCCTTTTTGTGCAGATGAGTTTGATATTGTTGGTCTTTGTTGTCA 301
Query 180 TATTGATGTGAATCATCCTGTGGAGGCTAAGAATGGGGTTTGTCCTGTCTGCACAAAGAG 239
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 302 TATTGATGTGAATCATCCTGTTGAAGCTAAGAATGGGGTTTGTCCTGTCTGCACAAAGAA 361
Query 240 GGTTGGATTGGACATTGTTGGCCATATTACAACGCAACACGGGAGCGTATTTAAGGTGCA 299
||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 362 GGTGGGATTGGACATTGTTGGCCATATAACAACGCAACACGGGAACGTATTTAAGGTGCA 421
Query 300 GCGAAGGAGAAGGTTGCGTAAAGGTGGATATAGCTCTGCCTATCTTACGCTTAAAAAGGA 359
|||||| |||||||||||||||||||||||||||||| |||||||||| |||||||| ||
Sbjct 422 GCGAAGAAGAAGGTTGCGTAAAGGTGGATATAGCTCTACCTATCTTACTCTTAAAAAAGA 481
Query 360 GCTTCGAGAAGCTAACTTACAGTCTTTTGGAGGATCTTCCACTTTCATTCCCTCTTCCAA 419
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 482 GCTTCGAGAAGCTAACTTACAGTCTCTTGGAGGGTCTTCCACTTTCATTCCCTCTTCCAA 541
Query 420 TATAGATTCTGATCCTCTACTCTCATCCTTTATGTTTAAACCTCCTTCGGCTATACCCAT 479
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 542 TATAGATTCTGATCCTCTACTCTCATCCTTTATGTTTAAACCCCCTTCGGCTATACCTAT 601
Query 480 CGCTGAAGGAGACTCGTTAGCA-ATTGTTTCACCTAAGGACACCCCTAAAAGCAACATAC 538
| |||||||||||||| ||||| | || ||||||||||||||| |||||||||| ||||
Sbjct 602 CACTGAAGGAGACTCGGTAGCACAA-GTCTCACCTAAGGACACCTCTAAAAGCAAAATAC 660
Query 539 GACAAGTATCACTT-TCCATCGAAGATCAAGAGAAGGCGAAA-AAGAGCGAGTTTGTGCA 596
||||| |||| || || | |||||||||||||||||| ||| |||||| |||||||||
Sbjct 661 AACAAGAATCA-TTCTCAAACGAAGATCAAGAGAAGGC-AAAGAAGAGCAAGTTTGTGCG 718
Query 597 GGGCATGCTTTGGTCTACCATGCTTGAAGACAACATCTAA 636
|||| |||||||||| ||||||||||||||||| |||||
Sbjct 719 GGGCTTGCTTTGGTCAACCATGCTTGAAGACAAGTTCTAA 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30693063817
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5