BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916681
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50650.1 | Symbols: | Transducin/WD40 repeat-like superfami... 913 0.0
AT5G50550.1 | Symbols: | Transducin/WD40 repeat-like superfami... 913 0.0
AT2G01470.1 | Symbols: STL2P, ATSEC12 | SEC12P-like 2 protein |... 745 0.0
> AT5G50650.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:20610212-20612255 FORWARD LENGTH=1346
Length=1346
Score = 913 bits (494), Expect = 0.0
Identities = 551/579 (95%), Gaps = 2/579 (0%)
Strand=Plus/Plus
Query 8 AGGATGGGACTTTGAGGGTTTTTGAATGGCCCAGCATGAA-AGTATTACTTAATGAGTCT 66
||||||||||||||||||||||||||||||| |||||||| | | |||||||||||||||
Sbjct 485 AGGATGGGACTTTGAGGGTTTTTGAATGGCCAAGCATGAAGACT-TTACTTAATGAGTCT 543
Query 67 CAGGCACATGCATCAGTTAAAAGCTTAACTTTCAGTGAAAGTGGTAAGTTTCTTGTATCT 126
|| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 544 AAGACACATGCATCAGTTAAAAGCCTAACTTTCAGCGAAAGTGGTAAGTTTCTTGTATCT 603
Query 127 CTTGGAGGTCCAGTTTGTCGGGTTTGGGATGTGAATGCTTCTGCTGCCATTGCCAGTCTA 186
||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 604 CTTGGAGCTCCACTTTGTCGGGTTTGGGATGTGAATGCTTCTGCTGCTATTGCCAGTCTA 663
Query 187 TCAAAAGAGAAGGATGAGATGTTTGCCTCCTGTAGATTCTCTGTAGACAGTGCAGGCAAT 246
|||||||||||||| |||||||||||||| ||||||||||||||||||| | |||||| |
Sbjct 664 TCAAAAGAGAAGGACGAGATGTTTGCCTCGTGTAGATTCTCTGTAGACAATTCAGGCAGT 723
Query 247 GAAGTTCTTTACATTGCTGCAAACACTGAACGTGGTGGGAGTATTATAACATGGGATTCA 306
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 724 GAAGTTCTTTATGTTGCTGCAAACACTCAACGTGGTGGGAGTATTATAACATGGGATACA 783
Query 307 AAATCATGGAAAAGAAGAAGTTCAAAGCTTATTAAAAGAAACAACTCTATATCTGCCTTT 366
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 ACATCATGGAGAAGAAGAAGTTCAAAGCTTATTAAAAGAAACAACTCTATATCTGCCTTT 843
Query 367 AATGTCTCAGCTGATGGGAAGCTTCTTGCAATAGGAACACTCGAAGGAGATCTTTTAATA 426
|||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||
Sbjct 844 AATGTCTCAGCTGATGGGAAGCTTCTTGCAGTAGGAACCCTCGAAGGAGATGTTTTAATA 903
Query 427 ATTGATTCGACAAAGATGCAAACTAACCAAGTCGTCAAGAAAGCTCATCTCGGTTTAGTC 486
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 904 ATTGATTCGACAAAGATGCAAACTAACCAAATCGTCAAGAAAGCTCATCTCGGTTTGGTC 963
Query 487 ACCGCACTGACTTTCTCCCCTGATTCAAGGTGCTTAGTGTCAGTATCTTTTGACTCAAGG 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 ACCGCACTGACTTTCTCCCCTGATTCAAGGTGCTTAGTGTCAGTATCTTTTGACTCAAGG 1023
Query 547 GCAAGGCTAACCGTGATCAAACAAAAGGGTGGAAAACGT 585
||||||||||||||||||||||||||||||| |||||||
Sbjct 1024 GCAAGGCTAACCGTGATCAAACAAAAGGGTGAAAAACGT 1062
> AT5G50550.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:20576870-20578913 FORWARD LENGTH=1346
Length=1346
Score = 913 bits (494), Expect = 0.0
Identities = 551/579 (95%), Gaps = 2/579 (0%)
Strand=Plus/Plus
Query 8 AGGATGGGACTTTGAGGGTTTTTGAATGGCCCAGCATGAA-AGTATTACTTAATGAGTCT 66
||||||||||||||||||||||||||||||| |||||||| | | |||||||||||||||
Sbjct 485 AGGATGGGACTTTGAGGGTTTTTGAATGGCCAAGCATGAAGACT-TTACTTAATGAGTCT 543
Query 67 CAGGCACATGCATCAGTTAAAAGCTTAACTTTCAGTGAAAGTGGTAAGTTTCTTGTATCT 126
|| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 544 AAGACACATGCATCAGTTAAAAGCCTAACTTTCAGCGAAAGTGGTAAGTTTCTTGTATCT 603
Query 127 CTTGGAGGTCCAGTTTGTCGGGTTTGGGATGTGAATGCTTCTGCTGCCATTGCCAGTCTA 186
||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 604 CTTGGAGCTCCACTTTGTCGGGTTTGGGATGTGAATGCTTCTGCTGCTATTGCCAGTCTA 663
Query 187 TCAAAAGAGAAGGATGAGATGTTTGCCTCCTGTAGATTCTCTGTAGACAGTGCAGGCAAT 246
|||||||||||||| |||||||||||||| ||||||||||||||||||| | |||||| |
Sbjct 664 TCAAAAGAGAAGGACGAGATGTTTGCCTCGTGTAGATTCTCTGTAGACAATTCAGGCAGT 723
Query 247 GAAGTTCTTTACATTGCTGCAAACACTGAACGTGGTGGGAGTATTATAACATGGGATTCA 306
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 724 GAAGTTCTTTATGTTGCTGCAAACACTCAACGTGGTGGGAGTATTATAACATGGGATACA 783
Query 307 AAATCATGGAAAAGAAGAAGTTCAAAGCTTATTAAAAGAAACAACTCTATATCTGCCTTT 366
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 ACATCATGGAGAAGAAGAAGTTCAAAGCTTATTAAAAGAAACAACTCTATATCTGCCTTT 843
Query 367 AATGTCTCAGCTGATGGGAAGCTTCTTGCAATAGGAACACTCGAAGGAGATCTTTTAATA 426
|||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||
Sbjct 844 AATGTCTCAGCTGATGGGAAGCTTCTTGCAGTAGGAACCCTCGAAGGAGATGTTTTAATA 903
Query 427 ATTGATTCGACAAAGATGCAAACTAACCAAGTCGTCAAGAAAGCTCATCTCGGTTTAGTC 486
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 904 ATTGATTCGACAAAGATGCAAACTAACCAAATCGTCAAGAAAGCTCATCTCGGTTTGGTC 963
Query 487 ACCGCACTGACTTTCTCCCCTGATTCAAGGTGCTTAGTGTCAGTATCTTTTGACTCAAGG 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 ACCGCACTGACTTTCTCCCCTGATTCAAGGTGCTTAGTGTCAGTATCTTTTGACTCAAGG 1023
Query 547 GCAAGGCTAACCGTGATCAAACAAAAGGGTGGAAAACGT 585
||||||||||||||||||||||||||||||| |||||||
Sbjct 1024 GCAAGGCTAACCGTGATCAAACAAAAGGGTGAAAAACGT 1062
> AT2G01470.1 | Symbols: STL2P, ATSEC12 | SEC12P-like 2 protein
| chr2:211970-214472 REVERSE LENGTH=1464
Length=1464
Score = 745 bits (403), Expect = 0.0
Identities = 525/582 (90%), Gaps = 15/582 (3%)
Strand=Plus/Plus
Query 8 AGGATGGGACTTTGAGGGTTTTTGAATGGCCCAGCATGAA-AGTATTACTTAATGAGTCT 66
||||||||||||||||||||||| ||||||| |||||||| | | ||||||||||||||
Sbjct 555 AGGATGGGACTTTGAGGGTTTTTAAATGGCCTAGCATGAATACT-TTACTTAATGAGTCC 613
Query 67 CAGGCACATGCATCAGTTAAAAG-CTTAACTTTCAGTGAAAGTGGT-AAGTTTCTTGTAT 124
||||| ||| | ||||||||| | ||| |||||||| ||||||||| || ||||||||||
Sbjct 614 CAGGCTCATTCTTCAGTTAAATGCCTT-ACTTTCAGCGAAAGTGGTCAA-TTTCTTGTAT 671
Query 125 CTCTTGGAGGTCCAGTTTGTCGGGTTTGGGATGTGAATGCTTCTGCTGCCATTGCCAGTC 184
||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 672 CTCTTGGCGGTCCAGTTTGTCGAGTTTGGGACGTGAATGCTTCTGCTGCTGTTGCCAGTC 731
Query 185 TATCAAAAGAGAAGGATGAGATGTTTGCCTCCTGTAGATTCTCTGTAGACAGTGCAGGCA 244
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 TATCAAAAGAGAAGGACGAGATGTTTGCCTCCTGTAGATTCTCTGTAGACAGTGCAGGCA 791
Query 245 ATGAAGTTCTTTACATTGCTGCAAACACTGAACGTGGTGGGAGTATTATAACATGGGATT 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 792 ATGAAGTTCTTTACATTGCTGCAAACACTGAACGTGGTGGGAGTATTATAACATGTGATA 851
Query 305 CAAAATCATGGAAAAGAAGAA-GTTCAAAGCTTATTAAAAGAAACAACTCTATATCTGCC 363
|||||| ||||||||||| || | || |||| ||| |||| || ||||||||||| ||
Sbjct 852 CAAAATTATGGAAAAGAA-AATGGTCGAAGCCTAT-AAAA-AAG-AACTCTATATCAGCT 907
Query 364 TTTAATGTCTCAGCTGATGGGAAGCTTCTTGCAATAGGAACACTCGAAGGAGATCTTTTA 423
||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||
Sbjct 908 TTTAATGTCTCAGCTGATGGGAAGCTTCTTGCAATAGGAACCCTTGAAGGAGATGTTTTA 967
Query 424 ATAATTGATTCGACAAAGA-TGCAAACTAACCAAGTCGTCAAGAAAGCTCATCTCGGTTT 482
||| |||| ||||||| || ||||||||| |||||||||||||||||| ||||| |||||
Sbjct 968 ATACTTGAATCGACAA-GAATGCAAACTATCCAAGTCGTCAAGAAAGCGCATCTTGGTTT 1026
Query 483 AGTCACCGCACTGACTTTCTCCCCTGATTCAAGGTGCTTAGTGTCAGTATCTTTTGACTC 542
||||| |||||||||||||| |||||||||||| | |||||||| ||||||||||||||
Sbjct 1027 GGTCACAGCACTGACTTTCTCTCCTGATTCAAGGGGATTAGTGTCGGTATCTTTTGACTC 1086
Query 543 AAGGGCAAGGCTAACCGTGATCAAACAAAAGGGTGGA-AAAC 583
|||||||||||| ||| |||| |||||||||| ||| ||||
Sbjct 1087 AAGGGCAAGGCTGACCATGATTGAACAAAAGGG-GGACAAAC 1127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30994468699
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5