BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg916940 Length=735 Score E Sequences producing significant alignments: (Bits) Value AT5G53030.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1077 0.0 > AT5G53030.1 | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:21505074-21506455 FORWARD LENGTH=1109 Length=1109 Score = 1077 bits (583), Expect = 0.0 Identities = 696/747 (93%), Gaps = 21/747 (3%) Strand=Plus/Plus Query 1 ATGGTTTTTGTCAACG---ATCAAGATCGGTTCTGTTC--C-ACGTC-TAA--A-CTTCC 50 ||||||||||| || | ||||||||||||||||||| | || | ||| | ||||| Sbjct 246 ATGGTTTTTGTTAATGATCATCAAGATCGGTTCTGTTCTTCTAC-ACGTAAGCAGCTTCC 304 Query 51 TCTGTTTTCATATCCAATGAATAACAGAGTATATGAAACAACTCCGGGATTAGCTACACC 110 |||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| Sbjct 305 TCTGTTTTCATATCCAATGAATAACATTGCATATGAAACTACTCCGGGATTAGCTACACC 364 Query 111 TCCGGTTAATATCGCAGGATCTGTACCTTTTCTTTGGGAAGAAGCTCCGGGAAAGCCTCG 170 ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 365 TCCGGTTAACATCGCTGGATCTGTTCCTTTTCTTTGGGAAGAAGCTCCGGGAAAGCCTCG 424 Query 171 TCGTGTTAAAAAATCGGCGAGGTCAAATCAGAACGGTGTTGTGAGATGTCTTGAGCTTCC 230 ||||||||||||| ||||||||| |||||||| ||||| |||||| ||||||||||||| Sbjct 425 TCGTGTTAAAAAACCGGCGAGGTTGAATCAGAAAGGTGTCGTGAGAAGTCTTGAGCTTCC 484 Query 231 TCCGAGGTTACTTTTGCCCGGAGAATCTACGACGGTGAATGAGCCTTCTCCGACTACTGT 290 |||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 485 TCCGAGGTTAGTTTTACCCGGAGAATCAACGACGGTGAATGAGCCTTCTCCGACTACTGT 544 Query 291 TCTTGATGGTCCTTACGATTTACGTCGTCGTTCACTGTCGCTTCCGAGATCAGCGGCTGT 350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 545 TCTTGATGGTCCTTACGATTTACGTCGTCGTTCACTGTCGCTTCCGAGATCAGCGGCTGT 604 Query 351 GATTAGGAAGTTAAGAGGAGTTCCGGCGCCGGCGCCGGAGAAAGAACAGAGATTGTTTGG 410 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 605 TATTAGGAAGTTGAGAGGAGTTCCGGCGCCGGCGCCGGAGAAAGAAGAGAGATTGGTTGG 664 Query 411 TGGGTCTAGTAGATGGGGAAGTTTTGGGAAATGTAAAGAGGTGTCTGAGGGTATATTT-G 469 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| | Sbjct 665 TGGGTCTAGTAGATGGGGAAGTTTTGGGAATTGTAAAGAGGTGTCTGAGGGTAT-TTTCG 723 Query 470 ACTTTTCACGTTTTAGAGATGACGGTTTTGATTGCCGGAGGGATTGGACCGGAGGAGGAG 529 ||||||||||||||||||||||||||| |||||||||| |||||||| |||| ||||||| Sbjct 724 ACTTTTCACGTTTTAGAGATGACGGTTATGATTGCCGGCGGGATTGGGCCGGTGGAGGAG 783 Query 530 GAGTTGGTAACTTCGCCGGAGACGGCGGCACAAAAGTGAAACTTTATA-GAGTTATAAAG 588 |||||||||||||||||||||| | | |||||||||||||||||| || |||||||| Sbjct 784 GAGTTGGTAACTTCGCCGGAGA---C-G--CAAAAGTGAAACTTTATAGGA-TTATAAAG 836 Query 589 AAAGGAAGCTTTTTTAATCTCTCTCATACAACAAAGTCAGATTTCTGGTTAAAAATGCAG 648 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 837 AAAGGAAGCTTTTTTAATCTCTCTCATACAACAAAGTCAGATTTTTGGTTAAAAATGCAG 896 Query 649 GCAAGGGTTTACGAAGGGTTTAAGCAAGTGATTCCGTGGAAGCGTAAGCAAGAGAATCTG 708 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 897 GCAAGGGTTTACGAAGGGTTTAAGCAAGTGATTCCATGGAAGCGTAAGCAAGAGAATCTG 956 Query 709 GAAAGAACAAACTCTTCCATTGTTTAA 735 ||||||||||||||||||||||||||| Sbjct 957 GAAAGAACAAACTCTTCCATTGTTTAA 983 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35666244370 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5