BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg916949 Length=723 Score E Sequences producing significant alignments: (Bits) Value AT5G53700.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 501 4e-141 AT5G03495.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 167 2e-40 > AT5G53700.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:21801143-21802787 FORWARD LENGTH=1075 Length=1075 Score = 501 bits (271), Expect = 4e-141 Identities = 567/704 (81%), Gaps = 43/704 (6%) Strand=Plus/Plus Query 1 ATGGAAGAATCCTCCGTCAAAGTTCAGGAATCGCTGGA-ACTGAACTGTAGAAAAAGCAT 59 |||||||||||| |||||| || || ||||||| ||| || |||| | | ||| || | Sbjct 79 ATGGAAGAATCCGCCGTCAGAGGTCTGGAATCGAAGGATAC-GAACAATCGTAAATGCTT 137 Query 60 TAGCACGATTTCCGTTGAAGGATATGACACTTCGCTTCATGGA-TATCCTCTCAAGCTCG 118 ||| | ||||||||| || ||||| ||||||||| ||||| || | |||||||||||||| Sbjct 138 TAGTAAGATTTCCGTCGAGGGATACGACACTTCGGTTCAT-GAGTTTCCTCTCAAGCTCG 196 Query 119 CGTTGAG-AAAGCACTTCGCTTCATGCGGAAAAATCGCAAGTATGTT--TGTTCCAAGAG 175 ||||| | |||||| ||||||||||||||||| || | || || || |||||| |||| Sbjct 197 CGTTG-GCAAAGCATTTCGCTTCATGCGGAAAGATTG-TAG-ATATTGATGTTCCCAGAG 253 Query 176 ACTTTAAAAGGGGTATCCTCAAGAGCCCTCTCTTCATTGA-TTTT--T--G---G--GGA 225 ||||||||| | ||||||||||||| |||||||||||| | |||| | | | ||| Sbjct 254 ACTTTAAAAAGCGTATCCTCAAGAGTCCTCTCTTCATT-ATTTTTCATGCGAAAGAAGGA 312 Query 226 GAAGGTGCGAG-AGACAAGGCATTGGAACTTAGTGGAAGTGACGTGGGACGATGGAATGT 284 ||| || | | |||||||||||||||||||||||| | |||||||||| |||||||||| Sbjct 313 GAAAGT-CCCGTAGACAAGGCATTGGAACTTAGTGGGACTGACGTGGGAGGATGGAATGT 371 Query 285 AGTCGTTAAGGCTGTACCCCGGCAGGAAGAT-TACTA-TGATCCTGCGGGATTCAACTTC 342 |||||| ||| || ||||| ||||| || || ||| | ||||||| |||| || || | Sbjct 372 AGTCGTGAAGTCTCTACCCGGGCAGCAA-ATGTAC-AGAGATCCTGGGGGAGTCGACCGC 429 Query 343 TTCAGGGGAGAACGCGA-GTTGGTGGTTAAGGTATATGATTTACCTTCTTCGGTG-CGTA 400 |||| ||||||||| | | | | ||||||||||||||| ||||||| || || | || Sbjct 430 TTCAAAGGAGAACGC-ACGCTCATAGTTAAGGTATATGATACACCTTCTACGTTGTC-TA 487 Query 401 AGATTGATGTCCAAATCGGGCTCTGTGAACATTTCTCTTCATGTGGAGAGGTCACCTGTG 460 |||||||| |||| |||||||| ||| ||||||||||||||||||||||||||||| || Sbjct 488 AGATTGATCTCCAGATCGGGCTGTGTAAACATTTCTCTTCATGTGGAGAGGTCACCGGTA 547 Query 461 TTACTGTTTTAGTCCACGGAATCTT-TG-T-TCACGAAAG-AAAGACTATAATTTCTATT 516 | | |||||| |||||||||| ||| || | ||||||||| |||| || | || |||| Sbjct 548 TAAGTGTTTTGGTCCACGGAAACTTGTGCTGTCACGAAAGTAAAG-CTCGAGTTGATATT 606 Query 517 ATGGGAGAAGGATGTGTAGAGAAGGCGCAGCAACTAAGTGGACAATGTAACACAGATGGA 576 |||||| ||||||||||||| ||||||| | |||||||||||| ||| | |||||||| Sbjct 607 ATGGGAAAAGGATGTGTAGACAAGGCGCTGGAACTAAGTGGAC---GTACCGCAGATGGA 663 Query 577 TGGAAGATTGTAGTTGATTCTGTTATCCCGCTA--AGTGCTGATAAAAGAAAGCCTACCG 634 ||||||||||||||| ||| |||| | |||| | || || || ||| ||||||||| | Sbjct 664 TGGAAGATTGTAGTTTATTTTGTTGTGCCGCCAGCAG-GCAGA-AAATTAAAGCCTACTG 721 Query 635 GCTGTGAACATCCAGCTGTTGTACTTGAGAGGATTAAGAAAGCT 678 | ||| ||||||| || ||| | |||||||||| ||||| ||| Sbjct 722 GAAGTGGACATCCAACTATTGGAGTTGAGAGGATGAAGAAGGCT 765 > AT5G03495.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:873331-875251 REVERSE LENGTH=1290 Length=1290 Score = 167 bits (90), Expect = 2e-40 Identities = 203/256 (79%), Gaps = 14/256 (5%) Strand=Plus/Plus Query 66 GATTTCCGTTGAAGGATATGACACTTCGCTTCATGGA-TATCCTCTCAAGCTCGCGTT-G 123 ||||||||| || |||||||||||| ||| | | || ||| | ||||||||| ||| | Sbjct 316 GATTTCCGTGGAGGGATATGACACTAGGCTCCGT-GAGTATACAGTCAAGCTCGTGTTGG 374 Query 124 AGAAAGCACTTCGCTTCATGCGGAAAAATCGCA-AGTATGTT-TGTTCCAAGAGACTTTA 181 | ||| || ||||||||||||||||| ||| || | ||| || |||||| ||||||||| Sbjct 375 A-AAAACATTTCGCTTCATGCGGAAAGATCACACA-TAT-TTATGTTCCCAGAGACTTTG 431 Query 182 AAAGGGGTATCCTCAAGAGCCCTC-TCTTCAT-TGATTTTTGGGGAGAAGGT-GCGAGAG 238 ||||||||||||||||||| || |||||| || | | ||||||||| |||| || Sbjct 432 AAAGGGGTATCCTCAAGAG-TGTCGCCTTCATGTG-TATCAAAGGAGAAGGTGGCGA-AG 488 Query 239 ACAAGGCATTGGAACTTAGTGGAAGTGACGTGGGACGATGGAATGTAGTCGTTAAGGCTG 298 | ||||||||| |||||||||| ||||| |||| |||||| || | |||||||| ||| Sbjct 489 AAAAGGCATTGCTGCTTAGTGGAACTGACGCGGGAGGATGGACTGCAATCGTTAAGCCTG 548 Query 299 TACCCCGGCAGGAAGA 314 || | ||||| |||| Sbjct 549 CACTCTGGCAGAAAGA 564 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35063434606 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5