BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916997
Length=2028
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53550.1 | Symbols: YSL3, ATYSL3 | YELLOW STRIPE like 3 | ch... 3131 0.0
> AT5G53550.1 | Symbols: YSL3, ATYSL3 | YELLOW STRIPE like 3 |
chr5:21755291-21758917 FORWARD LENGTH=2496
Length=2496
Score = 3131 bits (1695), Expect = 0.0
Identities = 1923/2034 (95%), Gaps = 12/2034 (1%)
Strand=Plus/Plus
Query 1 ATGAGGAGCATGATGATGGATAGAGAGGGAAGGAATGAGATAGAGAGAGAAGTAATAGAT 60
|||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 328 ATGAGGAGTATGATGATGGAGAGAGAGGGAAGGAATGAGATAGAAAGAGAAGTAATAGAT 387
Query 61 GACTTGGAAGAGACGCAAAACGAAGCAGATGAATTCAAGTCAATTCCTCCATGGAA-GAG 119
||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| ||
Sbjct 388 GACTTGGAAGAGACGCAAAACGAAGGAGATGATTTCAAGTCAATACCTCCATGGAAGGA- 446
Query 120 TCAAATTACTGTCAGAGGAATTGTTGCAAGTTTGATCATTGGTATAATCTACAGTGTGAT 179
||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 447 ACAAATCACTTTCAGAGGAATTGTTGCAAGTTTAATCATTGGTATAATCTACAGTGTGAT 506
Query 180 TGTGATGAAACTAAACCTAACAACAGGTTTGGTCCCAAACCTAAATGTCTCTGCAGCTCT 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 507 CGTGATGAAACTAAACCTAACAACAGGTTTGGTCCCAAACCTAAATGTCTCTGCAGCACT 566
Query 240 TTTAGCCTTTGTGTTTCTTAGAAGCTGGACCAAGCTGCTT-ACCAAAGCTGGAATTGTGA 298
|||||||||||| || ||||||||||||||||||||| || |||||||| || |||||||
Sbjct 567 TTTAGCCTTTGTCTTCCTTAGAAGCTGGACCAAGCTG-TTGACCAAAGCCGGGATTGTGA 625
Query 299 CTAAACCGTTTACTAAACAAGAGAACACTGTTGTCCAAACATGTGCTGTTGCTTGTTACA 358
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 CTAAACCGTTCACTAAACAAGAGAACACTGTTGTCCAAACATGTGCTGTTGCTTGTTACA 685
Query 359 GCATTTCAGTTGGAGGTGGGTTTGGTTCGTACCTTCTTGGTTTGAACAGAAATACTTAT- 417
||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 686 GCATTGCAGTTGGAGGTGGGTTTGGTTCATACCTTCTTGGTTTGAACAGAATTACTTATG 745
Query 418 ATACAGTCAGGAGGAACTCAAACTGATGGGAATTATCCGGGAA-GCACGAAAGAGCCTGG 476
| |||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||
Sbjct 746 A-ACAGTCAGGAGGAACTCACACTGATGGGAATTATCC-GGAAGGCACGAAAGAGCCTGG 803
Query 477 AATCGGTTGGATGACCGCTTTCTTGTTCTTTACTTGCTTTGTTGGTCTTTTAGCATTGGT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 AATCGGTTGGATGACCGCTTTCTTGTTCTTTACTTGCTTTGTTGGTCTTTTAGCATTGGT 863
Query 537 TCCTCTAAGAAAGATCATGATCATAGACTACAAGCTGACATATCCAAGTGGAACAGCTAC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 TCCTCTAAGAAAGATCATGATCATAGACTACAAGCTGACATATCCAAGTGGAACAGCTAC 923
Query 597 TGCGGTTTTGATCAACGGTTTCCACACTCCTAAAGGCAATAAAATGGCCAAGAAACAAGT 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 CGCGGTTTTGATCAACGGTTTCCACACTCCTAAAGGCAATAAAATGGCCAAGAAACAAGT 983
Query 657 GTTAGGCTTTGTGAAGTACTTCTCATTTAGCTTCATTTGGGCTTTCTTCCAATGGTTCTT 716
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 GTTTGGGTTTGTGAAGTACTTCTCATTTAGCTTCATTTGGGCTTTCTTCCAATGGTTCTT 1043
Query 717 CTCTGGTGGTACAAAGTGCGGATTCATTCAGTTTCCAACTTTCGGATTAAAAGCTTGGAC 776
||||||||||||| ||||||| ||||||||||||||||||||||| ||| |||||| ||
Sbjct 1044 CTCTGGTGGTACAGAGTGCGGTTTCATTCAGTTTCCAACTTTCGGGTTAGAAGCTTTGAA 1103
Query 777 GAACTCGTTCTACTTCGACTTTAGTATGACATACATTGGAGCAGGAATGATCTGTCCCCA 836
|||| | ||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1104 GAACACATTCTACTTCGACTTTAGCATGACATACGTTGGAGCAGGAATGATCTGTCCCCA 1163
Query 837 CATTGTCAACT-TATCTTTGCTTTTCGGCGCGGTTCTGTCTTGGGGAATCATGTGGCCAC 895
|||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1164 TATTGTCAA-TATATCTTTGCTTTTTGGCGCGGTTCTGTCTTGGGGAATCATGTGGCCAC 1222
Query 896 TCATTAAAGGTCTTAAAGGAGATTGGTTCCCATCAACTCTTTCTGAAAGTAGCATGAAGA 955
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1223 TCATTAAAGGTCTTAAAGGAGATTGGTTCCCATCAACTCTTCCTGAAAACAGCATGAAGA 1282
Query 956 GTCTCAATGGTTACAAGGTGTTTATATCAATCTCATTGATCCTCGGAGACGGGCTTTACC 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1283 GTCTCAATGGTTACAAGGTGTTTATATCAATCTCATTGATCCTCGGAGACGGGCTTTACC 1342
Query 1016 AATTCATCAAGATACTTGTTATCACAGGAATCAACATGTACGCCAAGTTAAAGGATCGCC 1075
||||||||||||||||| ||| |||||||| |||||||||| ||||||||| |||||
Sbjct 1343 AATTCATCAAGATACTTTTTAAGACAGGAATAAACATGTACGTCAAGTTAAACAATCGCA 1402
Query 1076 ACACTGGGAAATCTAATTCGGAGAAAGATAAGCAATCTATTGCAGATCTTAAAAGAGATG 1135
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 ACTCTGGGAAATCTAATTCGGAGAAAGATAAGCAATCTATTGCAGATCTTAAAAGAGATG 1462
Query 1136 AGATCTTTGTAAGAGACAGCTTTCCATTATGGGTGGCAGCAGTCGGATATGCAGCGTTCT 1195
|||||||||||||||||||| ||||||||||||| |||||||| ||||| ||||||||||
Sbjct 1463 AGATCTTTGTAAGAGACAGCATTCCATTATGGGTTGCAGCAGTAGGATACGCAGCGTTCT 1522
Query 1196 CTGTTGTCTCGATAATCGCAATCCCTATAATGTTCCCCGAGCTCAAATGGTACTTCATAG 1255
||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1523 CTGTTGTCTCGATCATCGCGATCCCTATAATGTTCCCCGAGCTGAAATGGTACTTCATAG 1582
Query 1256 TCGTAGCTTACATGTTAGCTCCATCGTTAGGTTTCAGCAACGCTTATGGAGCAGGACTTA 1315
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 1583 TCGTAGCTTACATGTTAGCTCCATCGTTAGGTTTCAGTAACGCTTATGGAGCAGGGCTAA 1642
Query 1316 CAGACATGAACATGGCTTATAACTATGGTAAAGTCGCTCTGTTCATCTTAGCCGCTATGG 1375
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1643 CAGATATGAACATGGCTTATAACTATGGTAAAGTCGCTCTGTTTATCTTAGCCGCTATGG 1702
Query 1376 CAGGGAAAGAAAACGGTGTCGTCGCGGGACTTGTTGGATGCGGGTTGATAAAATCGATTG 1435
|||||||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1703 CAGGGAAACAAAATGGTGTAGTCGCGGGACTTGTCGGATGCGGGTTGATAAAATCGATTG 1762
Query 1436 TCTCGATTTCTTCTGACCTAATGCACGATTTCAAGACAGGACATTTGACTCTGACTTCGC 1495
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1763 TATCGATTTCTTCTGACCTAATGCACGATTTCAAGACAGGACATTTGACTCTGACTTCAC 1822
Query 1496 CGAGGTCGATGCTTGTGAGTCAAGCAATCGGTACAGCGATCGGATGCGTTGTGGCTCCTC 1555
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1823 CTAGGTCGATGCTTGTGAGTCAAGCGATCGGTACAGCGATCGGATGCGTTGTGGCGCCTC 1882
Query 1556 TCACTTTCTTCTTGTTTTACAAAGCTTTCGATGTCGGAAACCCTGCCGGAGAGTATAAAG 1615
| ||||||||||||||||| ||||||||||||||||| |||| | |||||||| ||||
Sbjct 1883 TAACTTTCTTCTTGTTTTATAAAGCTTTCGATGTCGGGAACCAGGAGGGAGAGTACAAAG 1942
Query 1616 CTCCTTACGCTTTGGTATACAGAAACATGGCGATTCTTGGAGTTGAAGGTTTCTCTGCTT 1675
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1943 CTCCTTACGCTTTGGTATACAGAAACATGGCAATTCTTGGAGTTGAAGGTTTCTCTGCTT 2002
Query 1676 TGCCTCAACATTGTCTCCAGCTTTGTTACGGGTTTTTCGCATTCGCGGTGGCAGCGAATC 1735
|||||||||||||| | ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 2003 TGCCTCAACATTGTTTACAGCTTTGTTACGGGTTTTTCGCATTCGCGGTGGCGGCAAATC 2062
Query 1736 TTGTTAGGGATTGGTCGCCGGAGAAGATAGGGAAGTGGGTTCCATTACCGATGGCAATGG 1795
| ||||||||| ||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 2063 TCGTTAGGGATAGGTTACCGGATAAGATAGGGAATTGGGTTCCATTACCGATGGCAATGG 2122
Query 1796 CGGTTCCGTTTCTTGTCGGAGGGTACTTCGCCATTGATATGTGTGTTGGGA-GTTTGATT 1854
|||||||||||||||| ||||||||||| || |||||||||||||| |||| ||||||||
Sbjct 2123 CGGTTCCGTTTCTTGTTGGAGGGTACTTTGCTATTGATATGTGTGT-GGGAAGTTTGATT 2181
Query 1855 GTGTTTGCTTGGAATATGAGAGATCGGGTTAAAGCCGGTTTAATGGTACCGGCGGTTGCT 1914
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2182 GTGTTTGCTTGGAATATGAGAGATCGAGTTAAAGCCGGTTTAATGGTACCGGCGGTTGCT 2241
Query 1915 TCCGGTTTGATATGTGGAGATGGTCTTTGGATTTTGCCGTCGTCGGTTCTTGCTTTGGCC 1974
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2242 TCCGGTTTGATATGTGGAGATGGTCTATGGATTTTGCCGTCGTCGGTTCTTGCTTTGGCC 2301
Query 1975 GGAGTTAAACCTCCGATCTGTATGAACTTCATGCCGAGTAAATATTCGAGTTAA 2028
|| |||| |||||| || |||||| ||||||||||||||||||||||||||||
Sbjct 2302 GGCGTTAGACCTCCTATATGTATGGGCTTCATGCCGAGTAAATATTCGAGTTAA 2355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100501491090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5