BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917064
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53950.1 | Symbols: CUC2, ANAC098, ATCUC2 | NAC (No Apical M... 1718 0.0
AT5G18270.1 | Symbols: ANAC087 | Arabidopsis NAC domain contain... 207 1e-52
AT3G04060.1 | Symbols: anac046, NAC046 | NAC domain containing ... 174 1e-42
> AT5G53950.1 | Symbols: CUC2, ANAC098, ATCUC2 | NAC (No Apical
Meristem) domain transcriptional regulator superfamily protein
| chr5:21901966-21903823 REVERSE LENGTH=1156
Length=1156
Score = 1718 bits (930), Expect = 0.0
Identities = 1066/1129 (94%), Gaps = 20/1129 (2%)
Strand=Plus/Plus
Query 1 ATGAACATTCCATATTACCACTATGACCACGGCGGAGACAGCCAATATCTTCCACCGGGT 60
||| ||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 29 ATGGACATTCCGTATTACCACTACGACCATGGCGGAGACAGCCAATATCTTCCACCGGGT 88
Query 61 TTCAGGTTTCATCCTACGGACGAAGAGCTCATCACTCATTACCTCCTCCGCAAGGTCCTC 120
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 89 TTCAGGTTTCATCCCACGGACGAAGAGCTCATCACTCATTACCTTCTCCGCAAAGTCCTC 148
Query 121 GACGGTTGCTTCTCAAGCCGTGCCATCGCAGAGGTTGATCTCAACAAGTGTGAGCCTTGG 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 149 GACGGTTGCTTCTCAAGCCGTGCCATCGCAGAAGTTGATCTCAACAAGTGTGAGCCTTGG 208
Query 181 CAACTTCCCGGGAGAGCTAAGATGGGAGAGAAAGAATGGTACTTCTTTAGCCTCCGTGAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 CAACTTCCCGGGAGAGCTAAGATGGGAGAGAAAGAATGGTACTTCTTTAGCCTCCGTGAC 268
Query 241 CGGAAATATCCAACGGGGCTGAGAACAAACAGAGCAACTGAGGCTGGTTACTGGAAAGCT 300
||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 269 CGGAAGTATCCGACGGGACTGAGAACTAACAGAGCAACTGAGGCTGGTTACTGGAAAGCT 328
Query 301 ACCGGAAAAGACAGAGAGATCTTTAGTTCCAAGACTTGTGCACTTGTTGGGATGAAGAAG 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 329 ACCGGAAAAGACAGAGAGATCTTTAGTTCAAAGACTTGTGCACTTGTTGGGATGAAGAAG 388
Query 361 ACTCTTGTCTTTTACAAAGGAAGAGCTCCTAAAGGAGAGAAGAGTAATTGGGTTATGCAT 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 389 ACTCTTGTCTTTTACAAAGGAAGAGCTCCGAAAGGAGAGAAGAGTAATTGGGTTATGCAT 448
Query 421 GAATATCGTCTTGAAGGCAAATTCTCTTACCATTTCATCTCAAGAAGCTCCAAGGATGAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 GAATATCGTCTTGAAGGCAAATTCTCTTACCATTTCATCTCAAGAAGCTCCAAGGATGAA 508
Query 481 TGGGTGATCTCTAGGGTTTTCCAGAAAACCAGTTTAGTC-AGTACCGGAGCCG---CC-- 534
||||||||||||||||||||||||||||||| ||||| | || |||||||||| ||
Sbjct 509 TGGGTGATCTCTAGGGTTTTCCAGAAAACCACTTTAG-CTAGCACCGGAGCCGTCTCCGA 567
Query 535 -------------GGAGGAGCAAGTGTTAGCGTAAGCAGCGGCACTGGTGCATCTAAAAA 581
|||||||||| ||| |||||||||||||| |||||| ||||||||||
Sbjct 568 AGGAGGAGGAGGAGGAGGAGCAACTGTGAGCGTAAGCAGCGGTACTGGTCCATCTAAAAA 627
Query 582 GACAAAAGTACCCTCAACAATCTCTAGAAACAATCAAGAACAACCAAGCTCTCCTTCCTC 641
||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 628 GACGAAAGTACCCTCAACAATCTCAAGAAACTATCAAGAACAACCAAGCTCTCCTTCCTC 687
Query 642 CGTCTCACTCCCACCTCTCCTGGATCCCACCACCACCCTCGGCTACACCGACAGCAGTTG 701
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 688 CGTCTCACTCCCACCTCTCCTGGATCCGACCACTACCCTCGGCTACACCGACAGCAGTTG 747
Query 702 CTCCTACGACAGCCGTAGCACCAACACAACCGTCACAGCCAGCGCAATAACTGAGCACGT 761
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 748 CTCCTACGACAGCCGTAGCACCAACACAACCGTCACAGCCAGCGCAATAACCGAGCACGT 807
Query 762 GTCCTGTTTCTCCACTGTCCCTACTACTACTACGGCCTTGGGCTTAGACGTTAACTCATT 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 GTCCTGTTTCTCCACTGTCCCTACTACTACTACGGCCTTGGGCTTAGACGTTAACTCATT 867
Query 822 CAATCATCTTCCACCGCCGCCAGGGTTTGACTTTGACCCTTTTCCTCGTTTCGTCTCTAG 881
|| | |||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 868 CAGCCGTCTTCCACCGCCGCTAGGGTTTGACTTTGACCCTTTTCCTCGTTTCGTTTCTAG 927
Query 882 AAACGTCTCGAGTCTATCTAACTTCAGATCATTCCAAGAAAACTTCAATCACTTTCCTTA 941
||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 928 AAACGTCTCGACTCAATCTAACTTCAGATCGTTCCAAGAAAACTTCAATCAATTTCCTTA 987
Query 942 CTTTGGATCGTCTTCTACATCGACAATGACCTCCTCCGTTAATCTGCCTTCTTTCCAAGG 1001
|||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 988 CTTTGGATCGTCTTCTGCATCGACTATGACCTCCGCCGTTAATCTGCCTTCTTTCCAAGG 1047
Query 1002 CGGCGGTGGCGTCTCCGGGATGAATTACTGGCTACCGGCGACTGCGGATGAAAATGAGTC 1061
|||||| |||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 1048 CGGCGGAGGCGTCTCCGGGATGAATTACTGGCTACCGGCGACTGCCGAAGAGAATGAGTC 1107
Query 1062 AAAGGCCGGTGTGCTTCATGCTGGACTTGACTGTATTTGGAACTACTGA 1110
||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 AAAGGTCGGTGTGCTTCATGCTGGACTTGACTGTATTTGGAACTACTGA 1156
> AT5G18270.1 | Symbols: ANAC087 | Arabidopsis NAC domain containing
protein 87 | chr5:6040919-6042938 REVERSE LENGTH=1525
Length=1525
Score = 207 bits (112), Expect = 1e-52
Identities = 357/472 (76%), Gaps = 30/472 (6%)
Strand=Plus/Plus
Query 52 CCACCGGGTTTCAGGTTTCATCCTACGGACGAAGAGCTCATCAC-TCATTACC-TCCTCC 109
||||| ||||||||||||||||| || ||||||||| |||| || | ||||| |
Sbjct 259 CCACCTGGTTTCAGGTTTCATCCAACAGACGAAGAGATCATAACAT-GTTACCTTAAGGA 317
Query 110 GCAAGGTCCTCGACGGTTGCTTCTCAAGCCGT-GCCATCGCAGAGGTTGATCTCAACAAG 168
| ||||| | || | | ||| | || || ||||| | ||| | |||||||||||||
Sbjct 318 G-AAGGTTTTAAACAGCCGATTCAC-GGCTGTGGCCATGGGAGAAGCTGATCTCAACAAG 375
Query 169 TGTGAGCCTTGGCAACTT-CCCGGGAGAGCTAAGATGGGAGAGAAAGAATGGTACTTCTT 227
|||||||||||| | || || ||| || |||||||| |||||||| | ||||||||
Sbjct 376 TGTGAGCCTTGG-GATTTGCCAAAGAGGGCAAAGATGGGGGAGAAAGAGTTCTACTTCTT 434
Query 228 -TAGCCTCCGTGACCGGAAATATCCAACGGGGCTGAGAACAAACAGAGCAACTGAGGCTG 286
| | | | ||| |||| ||||| || ||| |||| || ||| | || || ||| | |
Sbjct 435 CT-GTCAAAGGGACAGGAAGTATCCGACTGGGATGAGGACGAACCGTGCGACGGAGTCAG 493
Query 287 GTTACTGGAAAGCTACCGGAAAAGA-CAGAGAGATCTT--TAGTTCCAAGACTTGTGCAC 343
| ||||||||||| ||||| || || || |||||||| || | ||| |||| |
Sbjct 494 GATACTGGAAAGCCACCGGGAAGGATAAG-GAGATCTTCAAAG-GCAAAG-GTTGT---C 547
Query 344 TTGTTGGGATGAAGAAGACTCTTGTCTTTTACAAAGGAAGAGCTCCTAAAGGAGAGAAGA 403
| |||||||||||||| || ||||| ||||| | |||||||||||| ||||| || ||||
Sbjct 548 TCGTTGGGATGAAGAAAACACTTGTGTTTTATAGAGGAAGAGCTCCAAAAGGTGAAAAGA 607
Query 404 GTAATTGGGTTATGCATGAATATCGTCTTGAAGGCAAAT-T-C-TCTTACCATTTCATCT 460
||||||||| |||||||||||||||||||||||||||| | | | |||| || || |
Sbjct 608 CTAATTGGGTCATGCATGAATATCGTCTTGAAGGCAAATATTCGTATTACAATCTC--C- 664
Query 461 CAAGAAGCTCCAAGG-ATGAATGGGT-GATCTCTAGGGTTTTCCAGAA-AAC 509
||| || || ||||| | |||||||| | | | ||||||||| || || |||
Sbjct 665 CAA-AATCTGCAAGGGACGAATGGGTCG-TGTGTAGGGTTTTTCACAAGAAC 714
> AT3G04060.1 | Symbols: anac046, NAC046 | NAC domain containing
protein 46 | chr3:1053366-1055163 REVERSE LENGTH=1487
Length=1487
Score = 174 bits (94), Expect = 1e-42
Identities = 247/319 (77%), Gaps = 18/319 (6%)
Strand=Plus/Plus
Query 199 AAGATGGGAGAGAAAGAATGGTACTTCTTT-AGCCTCCGTGACCGGAAATATCCAACGGG 257
|||||||| ||||| || | ||||| ||| ||| | || ||||| ||||| || ||
Sbjct 419 AAGATGGGGGAGAAGGAGTTTTACTT-TTTCTGCCAGAGGGATCGGAAGTATCCGACCGG 477
Query 258 GCTGAGAACAAACAGAGCAACTGAGGCTGGTTACTGGAAAGCTACCGGAAAAGAC-AGAG 316
| |||| || ||| | || || | | ||||||| ||||| || ||||| || ||| || |
Sbjct 478 GATGAGGACGAACCGTGCGACCGTGTCTGGTTATTGGAAGGCGACCGGGAAGGACAAG-G 536
Query 317 AGATCTTTAG-TTCCAAGACTTGTGCACTTGTTGGGATGAAGAAGACTCTTGTCTTT-TA 374
|||||||||| | ||| |||| ||||||||||||||||| || ||||| ||| ||
Sbjct 537 AGATCTTTAGAGGCAAAG-GTTGT---CTTGTTGGGATGAAGAAAACACTTGT-TTTCTA 591
Query 375 CAAAGGAAGAGCTCCTAAAGGAGAGAAGAGTAATTGGGTTATGCATGAATATCGTCTTGA 434
| |||||||||||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct 592 TACAGGAAGAGCTCCTAAAGGTGAAAAGACCAATTGGGTTATGCATGAATATCGTCTTGA 651
Query 435 AGGCAAAT-TCTCTTACCATTTCATCTC-AAGAAGCTCCAAGG-ATGAATGGGTGATCTC 491
|| |||| | ||||| ||| | || | || || | | |||| ||||||||||| | |
Sbjct 652 TGGAAAATAT-TCTTATCATAACCTCCCCAA-AACCGC-AAGGGATGAATGGGTGGTGTG 708
Query 492 TAGGGTTTTCCAGAA-AAC 509
||||||||| || || |||
Sbjct 709 TAGGGTTTTTCACAAGAAC 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54417390780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5