BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917116
Length=3660
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54280.2 | Symbols: ATM2, ATMYOS1, ATM4 | myosin 2 | chr5:22... 6063 0.0
AT4G27370.1 | Symbols: VIIIB, ATVIIIB | P-loop containing nucle... 2148 0.0
> AT5G54280.2 | Symbols: ATM2, ATMYOS1, ATM4 | myosin 2 | chr5:22039389-22046298
REVERSE LENGTH=4343
Length=4343
Score = 6063 bits (3283), Expect = 0.0
Identities = 3543/3669 (97%), Gaps = 15/3669 (0%)
Strand=Plus/Plus
Query 1 ATGATGTTATCGGCATCGCCGAACACACTAGCGAAAAGCTCGTTAGAGGAGATGCTTGAG 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 464 ATGATGTTATCGGCATCGCCGAACACACTAGCGAAAAGTTCGTTAGAGGAGATGCTTGAG 523
Query 61 TCTCTTCGTCAGAAAGATGAGTGTGATCGGCCTAAAGATATGCCACCGGCGCTTCCTTCT 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 524 TCTCTTCGTCAGAAAGATGAGTGTGATCGGCCTAAAGATATGCCTCCGGCGCTTCCTTCT 583
Query 121 CGGCCTAATTCTAGAGCTCGTCTTCCGTCGGCTCGTCGTTCACTTCCGGCGAAGTTTAAT 180
||||||||||| |||||||||||||| || ||||||||||| |||||||| || ||||||
Sbjct 584 CGGCCTAATTCAAGAGCTCGTCTTCCTTCTGCTCGTCGTTCGCTTCCGGCCAACTTTAAT 643
Query 181 GTTAGTAGTGTAATGGAAGATCAGAATGGAAGTGTTGTTTCTGCGACGCCTGCGGTggaa 240
||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 644 GTTTCTAGTGTAATGGAAGATCAGAACGGAAGTGTTGTTTCTGTGACGCCTGCGGTGGAA 703
Query 241 gctgaatcggaaaggaaagaggaaggagg-gaagaggaaagagaaggaTTTGGGTATTAA 299
|||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct 704 GCTGAATCGGAAAGGAAAGAGGAAGG-GGTGAAGAGGAAAGAGAAGGATTTGGGTGTTAA 762
Query 300 GAGGAATAGTTTTGGAAGTAAGAAAATGAGGACTGGTCTTAGGTCAGAGTCTCCGTATGC 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 763 GAGGAATAGTTTTGGAAGCAAGAAAATGAGGACTGGTCTTAGGTCAGAGTCTCCGTATGC 822
Query 360 AGCTGAGAAGGAAGAGGATGGTGTGATGATTAGTACT-GCTAAAGTTAGTCCGGTGGAGA 418
||| |||||||||||||| ||||||| |||||||| | |||||||||||| ||||||||
Sbjct 823 AGCAGAGAAGGAAGAGGAGGGTGTGAAGATTAGTA-TCGCTAAAGTTAGTTTGGTGGAGA 881
Query 419 ATACGGAGGAGCAT-A-AA-CCTGAGTCTGAGTGGAACAATAACGTTGAGTACTTCATTA 475
| |||||||||||| | || |||||||||||||||||||||||||||||||||||||| |
Sbjct 882 ACACGGAGGAGCATAATAAGCCTGAGTCTGAGTGGAACAATAACGTTGAGTACTTCATCA 941
Query 476 AGAAGAAACTTCGAGTTTGGTGTCGGGTATCTAATGGGCTGTGGCAACTGGGGAAGATAC 535
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 942 AGAAGAAACTTCGAGTTTGGTGTCGGGTATCTAATGGGCAGTGGCAACTGGGGAAGATAC 1001
Query 536 AGTCTACTTCTGCTGATACGTCGCTTGTTATGTTGTCCACTGAAAATGTTGTGAAAGTGT 595
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1002 AGTCTACTTCCGCTGATACGTCGCTTGTTATGTTGTCCACTGCAAATGTTGTGAAAGTGT 1061
Query 596 CTACTGGAGAGCTTTTTCCTGCAAACCCAGATATATTGGAAGGTGTTGAAGATCTTATAC 655
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 CTACTGAAGAGCTTTTTCCTGCAAACCCAGATATATTGGAAGGTGTTGAAGATCTTATAC 1121
Query 656 AGCTCAGTTATCTAAATGAACCATCTGTTCTTTATAACCTTCGTGTCAGATATTCGCAAG 715
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1122 AGCTCAGTTATCTAAATGAACCATCTGTTCTTTATAACCTTCGTGTCAGATATTTGCAAG 1181
Query 716 ACGTGATTTATAGTAAAGCAGGACCAGTATTGATTGCGGTCAATCCATTCAAGAATGTCG 775
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1182 ACGTGATTTATAGTAAAGCAGGACCTGTATTGATTGCGGTCAATCCATTCAAGAATGTAG 1241
Query 776 AAATTTATGGAAATGATGTTATCTCAGCTTATCAGAAGAAGGCTGTGGATGCTCCACATG 835
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1242 AAATTTATGGAAATGATGTTATCTCAGCTTATCAGAAGAAGGTTATGGATGCTCCACATG 1301
Query 836 TTTATGCTGTGGCGGATGCCGCTTATGATGAGATGATGAGTGAAGAGAAGAACCAGTCTA 895
| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 1302 TCTATGCTGTGGCGGATGCAGCTTATGATGAGATGATGAGAGAAGAGAAGAATCAGTCTC 1361
Query 896 TTATTATAAGTGGAGAAAGTGGAGCTGGGAAAACTGAGACTGCAAAATTTGCAATGCAGT 955
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 TTATAATAAGTGGAGAAAGTGGAGCTGGGAAAACTGAGACTGCAAAATTTGCAATGCAGT 1421
Query 956 ACTTGGCAGCTCTTGGTGGAGGTAGCTGTGGAGTAGAGTACGAAATCCTAAAGACAACCT 1015
||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1422 ACTTGGCAGCTCTCGGTGGAGGTAGCTGTGGAGTAGAGTATGAAATCCTAAAAACAACCT 1481
Query 1016 GCATACTCGAAGCTTTTGGGAACGCTAAAACATCAAGGAATGCTAACTCTAGCCGATTTG 1075
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1482 GCATACTCGAAGCTTTTGGAAACGCTAAAACATCAAGAAATGCTAACTCTAGCCGATTTG 1541
Query 1076 GTAAACTCATAGAAATTCATTTTAGTGCAATGGGAAAGATATGTGGAGCCAAACTTGAAA 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1542 GTAAACTCATAGAAATTCATTTTAGTGCAATGGGAAAGATATGTGGAGCCAAACTTGAAA 1601
Query 1136 C-TTTCTTGTTTGACCAGTCAAGAGTGGTTCAGCTGTTCAATGGCGAAAGATCCTACCAT 1194
| |||| || | || |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1602 CTTTTC-TGCTAGAGAAGTCAAGAGTGGTTCAGCTGTTCAATGGCGAAAGATCCTATCAT 1660
Query 1195 ATATTTTATGAGTTGTGTGCAGGTGCTTCGCCGATTCTTAAAGAGAGATTGAAGCTTAAA 1254
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1661 ATATTTTATGAGCTGTGTGCAGGTGCTTCACCGATTCTTAAAGAGAGATTGAAGCTTAAA 1720
Query 1255 ACAGCCAGTGAGTATACGTACCTGAGCCAGAGTGATTGCTTGACCATTGCCGGTGTTGAT 1314
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1721 ACAGCAAGTGAGTATACCTACCTGAGCCAGAGTGATTGCTTGACCATTGCCGGTGTTGAT 1780
Query 1315 GATGCTCAGAAATTTCACAAACTACTGGAAGCTTTTGACATTGTTCAAATCCCTAAAGAG 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1781 GATGCTCAGAAATTTCACAAACTACTGGAAGCTTTTGACATTGTTCAAATCCCTAAAGAG 1840
Query 1375 CATCAAGAGCGGGCATTTGCATTGCTTGCGGCAGTGTTGTGGCTAGGAAATGTATCTTTC 1434
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1841 CATCAAGAGAGGGCATTTGCATTGCTTGCAGCAGTGTTGTGGCTAGGAAATGTATCTTTT 1900
Query 1435 CGAGTTACTGACAATGAAAATCATGTGGAGGTGGTAGCGGATGAAGCTGTCGCCAATGCC 1494
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1901 CGAGTTACTGACAACGAAAATCATGTGGAGGTGGTAGCGGATGAAGCTGTCGCCAATGCC 1960
Query 1495 GCTATGTTAATGGGCTGCAACGCAGAAGAGCTTATGGTGGTTTTGTCCACCCGTAAACTT 1554
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1961 GCTATGTTAATGGGCTGCAACACAGAAGAGCTTATGGTGGTTTTGTCCACCCGTAAACTT 2020
Query 1555 CAAGCTGGTACAGATTGTATTGCTAAAAAACTGACATTGCGGCAGGCAACTGACATGAGG 1614
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2021 CAAGCTGGTACGGATTGTATTGCTAAAAAACTGACATTGCGGCAGGCAACTGACATGAGG 2080
Query 1615 GATGGAATAGCAAAATTTATTTATGCAAACCT-TTTCGACTGGCTTGTTGAGCAAATAAA 1673
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 2081 GATGGAATAGCAAAATTTATTTATGCAAACCTATTT-GACTGGCTTGTTGAGCAAATAAA 2139
Query 1674 CATTGCACTGGAAGTTGGTAAATCACGTACAGGAAGATCTATAAGCATCCTTGATATATA 1733
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2140 CATTGCATTGGAAGTCGGTAAATCACGTACAGGAAGATCTATAAGCATCCTTGATATATA 2199
Query 1734 TGGGTTTGAATCATTTAAGAATAACAGCTTTGAACAATTCTGTATAAACTATGCAAATGA 1793
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2200 TGGGTTTGAATCATTTAAGAATAACAGCTTTGAACAATTCTGTATAAACTACGCAAATGA 2259
Query 1794 AAGATTGCAGCAACACTTCAACCGGCATTTATTCAAACTTGAACAAGAGGAATATGAAGA 1853
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2260 AAGATTGCAGCAACACTTCAACCGGCATTTATTTAAACTTGAACAAGAGGAATATGAAGA 2319
Query 1854 AGATGGAATTGATTGGACTAAGGTCGAATTTGTAGACAATCAAGAGTGCTTAGATCTAAT 1913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2320 AGATGGAATTGATTGGACTAAGGTCGAATTTGTAGACAATCAAGAGTGCTTAGATCTAAT 2379
Query 1914 TGAGAAGAAACCGATTGGTTTGTTGTCTCTACTAGACGAGGAATCAAATTTTCCAAAAGC 1973
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2380 TGAGAAGAAACCAATTGGTTTGTTGTCTCTACTAGACGAGGAATCAAATTTTCCAAAAGC 2439
Query 1974 AACTGATTTGACCTTTGCCAACAAGCTCAAGCAACACTTGAAGACCAACTCTTGCTTCAA 2033
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2440 AACTGATTTGACCTTTGCCAACAAGCTCAAGCAACATTTGAAGACCAACTCTTGCTTCAA 2499
Query 2034 AGGAGAGAGAGGTCGAGCCTTCAGAGTTAATCATTATGCTGGAGAGGTTCTCTATGATAC 2093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2500 AGGAGAGAGAGGTCGAGCCTTCAGAGTTAATCATTATGCTGGAGAGGTTCTCTATGATAC 2559
Query 2094 AAATGGGTTTTTGGACAAGAACAGGGATCCGTTGCCTGCTGATCTTATCAATCTTTTATC 2153
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2560 AAATGGCTTTTTGGAGAAGAACAGGGATCCGTTACCTGCTGATCTTATCAATCTTTTATC 2619
Query 2154 ATCATGCGACTGCCAGCTGCTCAAATTGTTTTCAACTAAAATGCGTGACAAATCGCAGAA 2213
|||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||| ||
Sbjct 2620 ATCATGCGACTGCCAGTTGCTGAAATTGTTTTCAACTAAAATGCGTGGCAAATCGCAAAA 2679
Query 2214 GCCACTTATGTTATCGGACTCCACGAACCAAACTGTTGGAACAAAGTTCAAGGGTCAACT 2273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2680 GCCACTTATGTTATCGGACTCCACGAACCAAACTGTTGGAACAAAGTTCAAGGGTCAACT 2739
Query 2274 TTTCAAACTGATGAACAAGTTAGAGAACACAAGTCCTCACTTCATTCGATGCATAAAGCC 2333
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2740 TTTCAAATTGATGAACAAGTTAGAGAACACAAGTCCTCACTTCATTCGATGCATAAAGCC 2799
Query 2334 GAATTCGAAGCAGCTTCCCAGAGTTTATGAAGAGGATCTTGTCTTACAACAGCTTAGATG 2393
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2800 GAATTCAAAGCAGCTTCCCAGAGTTTATGAAGAGGATCTTGTCTTACAACAGCTTAGATG 2859
Query 2394 TTGTGGCGTGTTGGAAGTTGTTAGAATATCAAGATCTGGATATCCTACTCGTTTGACACA 2453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2860 TTGTGGCGTGTTGGAAGTTGTTAGAATATCAAGATCTGGATATCCTACTCGTTTGACACA 2919
Query 2454 TCAAGAGTTTGCGGGAAGATATGGGTTCCTATCGTCAGACAAAAAGGTCTCTCAGGATCC 2513
|||||||||||| ||||||||||| ||| ||| |||||||||||||||| ||||||||||
Sbjct 2920 TCAAGAGTTTGCAGGAAGATATGGTTTCTTATTGTCAGACAAAAAGGTCGCTCAGGATCC 2979
Query 2514 TCTGAGTGTATCAATTGCTGTTCTGAAACAATACGACGTTCATCCTGAAATGTATCAAGT 2573
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2980 TCTGAGCGTATCAATTGCTGTTCTGAAACAATATGACGTTCATCCTGAAATGTATCAAGT 3039
Query 2574 GGGTTACACAAAATTGTATCTCCGAACTGGACAAATTGGTATCTTTGAGGATCGGAGaaa 2633
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 3040 GGGTTACACAAAATTGTACCTCCGAACTGGACAAATTGGGATCTTTGAGGATCGGAGGAA 3099
Query 2634 aaaaGTTCTTCAAGGCATAGTGGGCTTACAAAAGCATTTCCGTGGTCACTTGTCTCGTGC 2693
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3100 AAAGGTTCTTCAAGGCATAGTGGGCTTACAAAAGCATTTCCGTGGTCACTTGTCTCGTGC 3159
Query 2694 ATACTTCCAAAATATGCGGAAAGTAACATTGGTTCTTCAGTCATATATACGAGGTGAAAA 2753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3160 ATACTTCCAAAATATGCGGAAAGTAACATTGGTTCTTCAGTCATATATACGAGGTGAAAA 3219
Query 2754 TGCCCGAAGAATGTTTGACACTGAAGCAAAAATCCATGCGGATTCTGTTTCTGAAGCAAG 2813
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3220 TGCCCGAAGATTGTTTGACACTGAAGCAAAATTCCATGCGGATTCTGTTTCTGAAGCAAG 3279
Query 2814 CACAGATGAGTTGACTGCAATCATACACTTGCAATCTGCGGTTCGTGGATGGTTGGCTCG 2873
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3280 CACAGATGAGTTGAGTGCAGTCATACACTTGCAATCTGCGGTTCGTGGATGGTTGGCTCG 3339
Query 2874 TAAACGTTTCAATGGTATGCAAAGACAGAAAGAATTACTCAATGTGACGACAAAATCAAA 2933
|||| ||||||| ||||||||||||| |||||| ||| ||||||| |||||||||||||
Sbjct 3340 CAAACATTTCAATAGTATGCAAAGACAAAAAGAACTACGCAATGTGGCGACAAAATCAAA 3399
Query 2934 GAGGAAAGCTGGCAGGAGGATTTCAGAAGACAAGGATATTCCTTTGGAGCAGTCC-CAAG 2992
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 3400 GAGGAAAGCTGGCAGGAGGATTTCAGAAGACAAGGATATTCCTCTGGAGCAG-CCACAAG 3458
Query 2993 TTCAA-CAACCATCTATGTCTGATCTCCAGAAACGGGTTTTGAAATCTGAAGCAGCTTTA 3051
||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3459 TTCAACCAA-CATCTATGTCTGATCTCCAGAAACGGATTTTGAAATCTGAAGCAGCTTTA 3517
Query 3052 GCGCAGAAGGAAGAAGAAAACACAGCTTTGAGAGAGCAGTTGAGGCAATTTGAGGAGAGA 3111
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3518 TCGCAGAAGGAAGAAGAAAACACAGCTTTGAGAGAGCAGTTGAGGCAATTTGAGGAGAGA 3577
Query 3112 TGGTCAGAGTATGATATAAAGATGAAGTCAATGGAGGAAACATGGCAAAAGCAAATGTCG 3171
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3578 TGGTCAGAGTATGATATAAAGATGAAGTCAATGGAGGAAACATGGCAAAAGCAAATGTCA 3637
Query 3172 TCATTGCAGATGAGTCTTGCCGCAGCTAGAAAGAGTCTAGCTGCAGAGAGCATTACGGGT 3231
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3638 TCATTGCAGATGAGTCTTGCCGCCGCTAGAAAGAGTCTAGCTGCAGAGAGCATTACGGGT 3697
Query 3232 CAAGCAGGAGGAAGACAAGACACATCGATATCACCTTTCGGTTATGACTCAGAGGACACA 3291
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3698 CAAGCAGGAGGAAGACAAGACACATCGATATCACCTTTCGGTTATGACTCAGAGGACACG 3757
Query 3292 ATGTCTACTGGGACTCCGGGAGTAAGAACTCCTACTACTAAGTTCACTAACGGAAACACT 3351
||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 3758 ATGTCTACTGGAACTCCGGGAGTAAGAACTCCTACTAATAAGTTCACAAACGGAAACACT 3817
Query 3352 CCTGAGCTCAGAATCAGAGAGCTTAACGGAAGCTTGAATGCGGTTAATCATCTCGCGAGA 3411
||||| ||||||||||||||||| |||||||| |||||||||||||||||||| || |||
Sbjct 3818 CCTGAACTCAGAATCAGAGAGCTCAACGGAAGTTTGAATGCGGTTAATCATCTTGCAAGA 3877
Query 3412 GAGTTTGACCAAAGGAGACTCAATTTCGATGAAGATGCAAGAGCTATCGTGGAGGTGAAG 3471
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3878 GAGTTTGACCAAAGGAGACTCAATTTCGATGAAGATGCAAGAGCTATTGTGGAGGTGAAG 3937
Query 3472 CTTGGACCGCAGGCAACTCCAAACGGGCAGCAACAGCAGCATCCAGAAGATGAATTTAGG 3531
|| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3938 CTCGGACCTCAGGCAACTCCAAACGGGCAGCAACAGCAACATCCAGAAGATGAATTTAGG 3997
Query 3532 AGACTGAAGCTAAGATTTGAGACATGGAAGAAAGATTACAAAGCTAGATTAAGAGATACT 3591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3998 AGACTGAAGCTAAGATTTGAGACATGGAAGAAAGATTACAAAGCTAGATTAAGAGATACT 4057
Query 3592 AAAGCAAGACTCCATAGAGTAGATGGTGATAAAGGTCGTCACCGGAAATGGTGGGGAAAA 3651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058 AAAGCAAGACTCCATAGAGTAGATGGTGATAAAGGTCGTCACCGGAAATGGTGGGGAAAA 4117
Query 3652 AGAGGCTAG 3660
|||||||||
Sbjct 4118 AGAGGCTAG 4126
> AT4G27370.1 | Symbols: VIIIB, ATVIIIB | P-loop containing nucleoside
triphosphate hydrolases superfamily protein | chr4:13694881-13700780
REVERSE LENGTH=3405
Length=3405
Score = 2148 bits (1163), Expect = 0.0
Identities = 2283/2810 (81%), Gaps = 131/2810 (5%)
Strand=Plus/Plus
Query 443 CTGAGTGGAACAATAACGTTGAGTACTTCATTAAGAAGAAACTTCGAGTTTGGTGTCG-G 501
|||| |||| ||||| || |||||| ||| | | | |||||||| | ||||||||||| |
Sbjct 296 CTGAATGGATCAATAGCGCTGAGTATTTCGTCAGGGAGAAACTTTGTGTTTGGTGTCGAG 355
Query 502 GT-AT-CTAATGGGCTGTGGCAAC-TGGGGAAGATACAGTCTACTTCTGC---TGAT-AC 554
| | ||||||||| ||||| || ||||||||||||| ||||||||| | |||| |
Sbjct 356 TTGCTGCTAATGGGCAGTGGC-ACTTGGGGAAGATACATTCTACTTCTTCTAGTGATGAT 414
Query 555 GTCGCT-TGTTATGTTGTCCACTGAA-AATGTTGTGAAAGTGTCTACTGGA-GAGCTTTT 611
|| | | ||||||| ||||| || || | | ||| ||| | | |||| ||| ||||
Sbjct 415 GT-G-TGTGTTATGCTGTCCGCT-AACGACGATGT--AAG-AAC-AATGGAGGAGATTTT 467
Query 612 TCCTGCAAACCCAGATATATTGGAAGGTGTTGAAGATCTTA-TACAGCTCAGTTATCTAA 670
||||| |||||||| || || ||||| |||||||| |||| | ||||| |||||| | |
Sbjct 468 CCCTGCTAACCCAGAGATTTTAGAAGGAGTTGAAGACCTTACT-CAGCTTAGTTATTTGA 526
Query 671 ATGAACCATCTGTTCTTTATAACCTTCGTGTCAGATATTCGCAAGACGTGATTTATAGTA 730
|||| |||||| |||| || ||||| || |||||||| || |||||| ||||||||||||
Sbjct 527 ATGAGCCATCTCTTCTCTACAACCTCCGGGTCAGATACTCACAAGACTTGATTTATAGTA 586
Query 731 AAGCAGGACCAGTATTGATTGCGGTCAATCCATTCAAGAATGTCGAAATTTATGGA-AAT 789
||||||| ||||| ||||| || || ||||| || ||||||||| | || |||||| ||
Sbjct 587 AAGCAGGGCCAGTTTTGATCGCAGTAAATCCTTTTAAGAATGTCCAGATCTATGGAGAA- 645
Query 790 GATG-TTATCTCAGCTTATCAGAAGAAGGCTGTGGATGCTCCACATGTTTATGCTGTGGC 848
|| | || | ||||||||||||||||| ||| |||||||||| ||||||||||| |||||
Sbjct 646 GA-GTTTCTATCAGCTTATCAGAAGAATGCTTTGGATGCTCCTCATGTTTATGCAGTGGC 704
Query 849 GGATGCCGCTTATGATGAGATGATGAGTGAAGAGAAGAACCAGTCTATTATTATAAGTGG 908
||||| ||||||||||| |||||||| || ||||||||||| |||||||| ||||||||
Sbjct 705 AGATGCAGCTTATGATGATATGATGAGAGAGGAGAAGAACCAATCTATTATCATAAGTGG 764
Query 909 AGAAAGTGGAGCTGGGAAAACTGAGACTGCAAAATTTGCAATGCAGTACTTGGCAGCTCT 968
||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct 765 AGAAAGTGGAGCTGGGAAAACTGAGACAGCAAAATATGCAATGCAGTACTTGGAAGCTCT 824
Query 969 TGGTGGAGGTAGCTGTGGAGTAGAGTACGAAATCCTAAAGACAACCTGCATACTCGAAGC 1028
|||||||||||||| ||| || || | |||||||||||||||| || ||||| |||||
Sbjct 825 TGGTGGAGGTAGCTTTGGGGTGGAAAATGAAATCCTAAAGACAAATTGTATACTTGAAGC 884
Query 1029 TTTTGGGAACGCTAAAACATCAAGGAATGCTAACTCTAGCCGATTTGGTAAACTCATAGA 1088
||||||||| |||||||||||||| |||| ||||||||||||||| |||||||| || ||
Sbjct 885 TTTTGGGAATGCTAAAACATCAAGAAATGATAACTCTAGCCGATTCGGTAAACTGATGGA 944
Query 1089 AATTCATTTTAGTGCAATGGGAAAGATATGTGGAGCCAAACTTGAAACTTTCTTGTTTG- 1147
|||||||||||||||| |||||||||||| ||||| |||||||||||||||| ||||
Sbjct 945 GATTCATTTTAGTGCAAAGGGAAAGATATGCGGAGCTAAACTTGAAACTTTCTC-TTTGG 1003
Query 1148 ACCAGTCAAGAGTGGTTCAGCTGTTCAATGGCGAAAGATCCTACCATATATTTTATGAGT 1207
||||||||||||||| |||||||| ||||||||| |||| ||||||||| |||||| | |
Sbjct 1004 ACCAGTCAAGAGTGGCTCAGCTGTGCAATGGCGAGAGATGCTACCATATCTTTTATCAAT 1063
Query 1208 TGTGTGCAGGTGCTTCGCCGATTCTTAAAGAGAGATTGAAGCTTAAAACAGCCAGTGAGT 1267
|||||||||| ||||| || ||||||||||||||||||||| ||||| |||| ||||| |
Sbjct 1064 TGTGTGCAGGAGCTTCACCAATTCTTAAAGAGAGATTGAAGATTAAAGCAGCAAGTGAAT 1123
Query 1268 ATACGTACCTGAGCCAGAGTGATTGCTTGACCATTGC-CGGTGTTGATGATGCTCAGAAA 1326
| | || ||| |||||| ||||||| ||||||| || | |||||||||||||||
Sbjct 1124 ACAATTATTTGAACCAGAGCAATTGCTTAACCATTGATCGCACT-GATGATGCTCAGAAA 1182
Query 1327 TTTCACAAACT-ACTGGAAGCTTTTGACATTGTTCAAATCCCTAAAGAGCATCAAGAGCG 1385
||||||||||| | |||||||||| ||||||||||||| ||| |||| | ||||| ||
Sbjct 1183 TTTCACAAACTGA-TGGAAGCTTTCAACATTGTTCAAATTCCTCAAGAATACCAAGAACG 1241
Query 1386 GGCATTTGCATTGCTTGCGGCAGTGTTGTGGCTAGGAAATGTATCTTTCCGA-GTTACTG 1444
|||||||| ||||||| || ||||| |||||||||||||||||||| || || | ||
Sbjct 1242 TACATTTGCACTGCTTGCAGCTGTGTTATGGCTAGGAAATGTATCTTTT-GAAGTGATTG 1300
Query 1445 ACAATGAAAATCATGTGGAGGTGGTAGCGGATGAAGCTGTCGCCAATGCCGCTATGTTAA 1504
|||||||||| ||||| || |||||||| |||||||||||| | |||| ||||||||||
Sbjct 1301 ACAATGAAAACCATGTCGAAGTGGTAGCAGATGAAGCTGTCACTAATGTAGCTATGTTAA 1360
Query 1505 TGGGCTGCAACGCAGAAGAGCTTATGGTGGTTTTGTCCACCCGTAAACTTCAAGCTGGTA 1564
||||||||||| || || ||||||||||||||||||| || | || || ||||||||||
Sbjct 1361 TGGGCTGCAACTCAAAAAAGCTTATGGTGGTTTTGTCTACATGCAAGCTCCAAGCTGGTA 1420
Query 1565 CAGATTGTATTGCTAAAAAACTGACATTGCGGCAGGCAACTGACATGAGGGATGGAATAG 1624
|||||| |||||||||| |||||||||||| ||||||||||| ||||||||| | |
Sbjct 1421 GAGATTGCATTGCTAAAAGACTGACATTGCGACAGGCAACTGATATGAGGGATTCTCTGG 1480
Query 1625 C-AAAATTTATTTATGCAAACCTT-TTCGACTGGCTTGTTGAGCAAATAAACATTGCACT 1682
| ||||| || ||||| | | || ||| |||||||||||||||||||||||||| ||||
Sbjct 1481 CGAAAATC-ATCTATGCGAGC-TTATTCAACTGGCTTGTTGAGCAAATAAACATTTCACT 1538
Query 1683 GGAAGTTGGTAAATCACGTACAGGAAGATCTATAAGCATCCTTGATATATATGGGTTTGA 1742
|||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1539 GGAAGTTGGTAACTCACGTACAGGAAGATCTATTAGTATCCTTGATATATATGGGTTTGA 1598
Query 1743 ATCATTTAAGAATAACAGCTTT-GAACAATTCTGTATAAACTATGCAAATGAAAGATTGC 1801
||||||||| |||| || ||| |||||||| || ||||||||||||||||||||| |||
Sbjct 1599 GTCATTTAAGGATAATAG-TTTCGAACAATTTTGCATAAACTATGCAAATGAAAGACTGC 1657
Query 1802 AGCAACACTTCAACCGGCATTTATTCAAACTTGAACAAGAGGAATATGAAGAAGATGGAA 1861
||||||| |||||||| ||| |||| ||||||||||||||||||||||||| |||||||
Sbjct 1658 AGCAACATTTCAACCGACATCTATTTAAACTTGAACAAGAGGAATATGAAGGGGATGGAA 1717
Query 1862 TTGATTGGACTAAGGTCGAATTTGTAGACAATCAAGAGTG-CTTAGATCTAATTGAGAAG 1920
|||||||||||||||||||||| |||||||||||||||| || | |||| |||||||||
Sbjct 1718 TTGATTGGACTAAGGTCGAATTCATAGACAATCAAGAGTGTCTAA-ATCTGATTGAGAAG 1776
Query 1921 AAACCGATTGGTTTGTTGTCTCTACTAGACGAGGAATCAAATTTTCCAAAAGCAACTGAT 1980
||||| ||||||||| | || ||| || | |||||||||||||||||||| |||||||||
Sbjct 1777 AAACCCATTGGTTTGGTATCGCTATTAAATGAGGAATCAAATTTTCCAAAGGCAACTGAT 1836
Query 1981 TTGACCTTTGCCAACAAGCTCAAGCAACACTTGAA-GACCAACTCTTGCTTCAAAGGAGA 2039
||| |||||||||||||||||||| || ||||| | | |||||||| ||||| |||||
Sbjct 1837 ACGACGTTTGCCAACAAGCTCAAGCAGCATTTGAATG-CTAACTCTTGTTTCAAGGGAGA 1895
Query 2040 GAGAGGTCGAGCCTTCAGAGTTAATCATTATGCTGGAGAGGTTCTCTATGATACAAATGG 2099
||||||||| | |||||| |||| |||||||| ||||||||||||||| ||||||||||
Sbjct 1896 GAGAGGTCGGGGTTTCAGAATTAAGCATTATGCCGGAGAGGTTCTCTATAATACAAATGG 1955
Query 2100 GTTTTTGGACAAGAACAGGGATCCGTTGCCTGCTGATCTTATC-AATCTTTTATCATCAT 2158
|| |||| |||||||| |||||| ||| || |||||||||| || |||||||||| |
Sbjct 1956 CTTCCTGGAAAAGAACAGAGATCCGCTGCATGTTGATCTTATCCAA-CTTTTATCATTGT 2014
Query 2159 GCGACTGCCAGCTGCTCAAATTGTTTTCAACTAAAATGCGTGACAAATCGC-AGAAGCCA 2217
|| | || || | | || ||||||| ||||| |||| | || | | | | |||||
Sbjct 2015 GCAAATGTCAATTATTGAACCTGTTTTCTACTAAGATGCATCACGATTTTCTA-AAGCCG 2073
Query 2218 -CTTATGTTATCGGACTCCACGAACCAAACTGT--TGGAACAAAGTTCAAGGGTCAACTT 2274
| | || |||||||||| ||| |||| ||| | | ||| ||| ||||| ||||||
Sbjct 2074 GCA-ACCTTTTCGGACTCCATGAATCAAAGTGTGATTGC-CAA-GTTTAAGGGCCAACTT 2130
Query 2275 TTCAAACTGATGAACAAGTTAGA-GAACACAAGTCCTCACTTCATTCGATGCATAAAGCC 2333
||||| |||||||||||||||| || ||| | |||||| || |||||||||||||| ||
Sbjct 2131 TTCAAGTTGATGAACAAGTTAGAAGA-CACTACTCCTCATTTTATTCGATGCATAAAACC 2189
Query 2334 GAATTCGAAGCAGCTTCCCAGAGTTTATGAAGAGGATCTTGT-CTTACAACAGCTTAGAT 2392
||||| || |||||||| || |||| ||||| ||| ||| || ||||||||||||||
Sbjct 2190 AAATTCAAATCAGCTTCCTGGACTTTACGAAGAAAATCATGTTCT-ACAACAGCTTAGAT 2248
Query 2393 GTTGTGGCGTGTTGGA-AGTTGTTAGAATATCAAGATCTGGATATCCTACTCGTTTGACA 2451
|||||||||| ||||| | ||||||||||||||||||| ||||||||||| || ||||||
Sbjct 2249 GTTGTGGCGTTTTGGAGA-TTGTTAGAATATCAAGATCAGGATATCCTACGCGGTTGACA 2307
Query 2452 CATCAAGAGTTTGCGGGAAGATATGGGTTCCTA-TCGTCAG-ACA-AA-AAGGTCTCTCA 2507
|| || ||| |||| | ||||||||| | |||| | | | | ||| || || |||| ||
Sbjct 2308 CACCAGGAGCTTGCAGTAAGATATGGATGCCTACT-G-CTGGACACAAGAA--TCTCCCA 2363
Query 2508 GGATCCTCTGAGTGTATCAATTGCTGTTCTGAAACAATACGA-CGTTCATCCTGAAATGT 2566
|||||| || || ||||| ||| || ||||||||| | | | ||| |||||||||||
Sbjct 2364 GGATCCACTTAGCACATCAAAAGCTATTTTGAAACAATGCAATC-TTCCTCCTGAAATGT 2422
Query 2567 ATCAAGTGGGTTACAC-AAAATTGTATCTCCGAACTGGACAAATTGGTATCTTTGAGGAT 2625
||||||| ||||| || ||||| || |||||||||||| |||| | || |||||||
Sbjct 2423 ATCAAGTTGGTTATACGAAAATA-TACCTCCGAACTGGAGTAATTAGCGTCCTTGAGGAA 2481
Query 2626 CGGAGaaaaaa--a-GTTCTT-CAAGGCATAGTGGGCTTACAAAAGCA-TTTCCGTGGTC 2680
|||||||| | ||| || | |||||| | || ||||| ||||| |||| |||||
Sbjct 2482 ---AGAAAAAAGTATGTT-TTGCGTGGCATACTTGGATTACAGAAGCAATTTC-GTGGTT 2536
Query 2681 A-CTTGTCTCGTGCATACTTCCAAAATATGCGGAAAG-TAACATTGGTTCTTCAGTCATA 2738
| | | |||||| |||||| || |||||| |||| | | || || | |||||||||||
Sbjct 2537 ATCA-GACTCGTGAATACTTTCACAATATGAGGAATGCTG-CAGTGATACTTCAGTCATA 2594
Query 2739 TATACGAGGTGAAAATGCCCGAAGAATGTTTGACACTGAAGCAA-A-AATCCATGCGGAT 2796
||| || || ||||||||| | |||| | ||| || | | | |||| | || ||
Sbjct 2595 TATCCGTGGAGAAAATGCCAGGAGAAACT---ACATTGTGGTAGGAGAATC-A-GCT-AT 2648
Query 2797 TCTGTTTCTGA-AGCAAGCAC-AGATGAG-TTGACTGCAA-TCATACACTTGCAATCTGC 2852
| ||||| | ||||| || | | ||| |||| |||| | ||||||||||||| |
Sbjct 2649 T--GTTTCC-ACAGCAATAACTAAA-GAGCTTGA-TGCAGCT-ATACACTTGCAATATAT 2702
Query 2853 GGTTCGTGGATGGTTGGCTCGTAAACGT-TTCAATGGTATGCAA-AGACAGAA-AGAAT- 2908
||| || |||| |||||||||||| | || ||| ||| |||| ||| |||| | ||
Sbjct 2703 GGTACGCAAATGGCTGGCTCGTAAAC-TCTTAAATAGTACGCAACAGA-AGAACA-AACC 2759
Query 2909 TACTCAATGTGACGACAAAATCAAAGAGGAAAG-CTGGCAG-GAGGATTTCAGAAGACAA 2966
| | ||||| || || |||| | | || ||||| | || |||| |||| ||||||||
Sbjct 2760 T-CGCAATGAGAAGAAAAAAACGA-GAAGAAAGTCAA-CAAAGAGGGTTTCCGAAGACAA 2816
Query 2967 GGATA-TTCCTTTG-GAGCAGTCCCAAGTTCAACAACCA-T-CTATGTCTGATCTCCAGA 3022
||| | ||| ||| ||||||| | || |||| | || || ||||||||||||
Sbjct 2817 GGA-ACTTC-TTTCAGAGCAGTTTGAGGTCCAACCTTGTGTTCT-TG-CTGATCTCCAGA 2872
Query 3023 AACGGGTTTTGAAA-TCTGAAGCAGCTTTAGCGCAGAAGGAAGAAGAAAACACAGCTTTG 3081
|||||| ||||| || ||||||||| || |||||||||||| |||||||| || |||
Sbjct 2873 GCCGGGTTCTGAAAGTC-GAAGCAGCTATAATGCAGAAGGAAGATGAAAACACTGCATTG 2931
Query 3082 -AGAGAGCAGTTG-AGGCAATTTGAGGAGAGATGGTCAGAGTATGATATAAAGA-TGAAG 3138
|| ||| ||||| | | ||||||||| ||||||| |||| | || | || || |||||
Sbjct 2932 CAG-GAGGAGTTGCAA-CGATTTGAGGAAAGATGGTTAGAGAACGAAACAA-GAATGAAG 2988
Query 3139 TCAATGGAGGAAACATGGCAAAAGCAAATGTCGTCATTGCAGATGAGTCT 3188
||||||||||| |||||||||||||| ||||||||| |||||||||||||
Sbjct 2989 TCAATGGAGGACACATGGCAAAAGCATATGTCGTCAATGCAGATGAGTCT 3038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 182256503919
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5