BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg917356

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G56550.1 | Symbols: OXS3, ATOXS3 | oxidative stress 3 | chr5...   782    0.0  


> AT5G56550.1 | Symbols: OXS3, ATOXS3 | oxidative stress 3 | chr5:22895616-22896653 
REVERSE LENGTH=901
Length=901

 Score =  782 bits (423),  Expect = 0.0
 Identities = 494/526 (94%), Gaps = 14/526 (3%)
 Strand=Plus/Plus

Query  1    ATGTTCAAAGAGATGAATCTGAATCTGAAGCAAATGGGCAACATGATCTATGAAGATCCA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  152  ATGTTCAAAGAGATGAATCTGAATCTGAAGCAAATGGGCAACATGATCTATGAAGATCCA  211

Query  61   ACAAGGATCCAAGAAGAAGA---CATTGTTCAAGGAGTTTCAAGAACATTCTCTGAGGAA  117
            ||||||||||||||||||||   ||||||||||| |||||||| |||||||||||| |||
Sbjct  212  ACAAGGATCCAAGAAGAAGAAGACATTGTTCAAGAAGTTTCAACAACATTCTCTGATGAA  271

Query  118  GAAGA-AGATTCATCATCTTGTTCATTATCTTCTTCCATGTGTTCTTCATCTGATTTAAC  176
            ||||| | | ||||||||||||||||||||||||||||||||||||  || |  || | |
Sbjct  272  GAAGATA-ACTCATCATCTTGTTCATTATCTTCTTCCATGTGTTCTG-AT-T--TT-A-C  324

Query  177  AGAGGATGATGATGATGATG-T-TT-CTTCATCTTCTTCTAATGGACCTCTTGAAGATCT  233
            |||||||||||||||||||| | || ||||||||||||| ||||||||||||||||||||
Sbjct  325  AGAGGATGATGATGATGATGATGTTTCTTCATCTTCTTCAAATGGACCTCTTGAAGATCT  384

Query  234  CTCTGACCTCATGTCACATCTCCCAATCAAGAGGGGATTATCAAAGTTCTATGAAGGAAG  293
            |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| 
Sbjct  385  CTCTGACCTCATGTCACACCTCCCTATCAAGAGGGGATTATCAAAGTTCTATGAAGGAAA  444

Query  294  ATCTCAATCATTCACATCACTAGCAAATGTTAAAAGCCTTGAAGATCTTATGAAGAGAGG  353
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  445  ATCTCAATCATTCACATCACTAGGAAATGTTAAAAGCCTTGAAGATCTTATGAAGAGAGG  504

Query  354  GTTTAAAAATAGAAACTATGGAGCAAAAAGAAAGTCATCTAGGAGTACTGGAGGGATTTT  413
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  505  GTTTAAAAGTAGAAACTATGGAGCAAAAAGAAAGTCATCTAGGAGTACTGGAGGGATTTT  564

Query  414  AGATCAAAGCTATAAAAGGGTTTATAGTCCTAGAGCTACAATCTCCAAGAAACCCAACAA  473
            |||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||| 
Sbjct  565  AGATCAAAGCTACAAAAGGGTTTTTAGTCCTAAAGCTACAATCTCCAAGAAACCCAACAG  624

Query  474  AACACCTTCCTCTGCTCTCTCTTGTCTTGCCAGAAGAAGACCTTAG  519
            |||||||||||||| |||||||||||| ||||||||||||| ||||
Sbjct  625  AACACCTTCCTCTGTTCTCTCTTGTCTAGCCAGAAGAAGACATTAG  670



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24815668618


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5