BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917379
Length=1659
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56850.1 | Symbols: | unknown protein; EXPRESSED IN: 21 pla... 2302 0.0
> AT5G56850.1 | Symbols: | unknown protein; EXPRESSED IN: 21 plant
structures; EXPRESSED DURING: 13 growth stages; Has 35333
Blast hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
| chr5:22985193-22988013 REVERSE LENGTH=1795
Length=1795
Score = 2302 bits (1246), Expect = 0.0
Identities = 1541/1679 (92%), Gaps = 37/1679 (2%)
Strand=Plus/Plus
Query 1 ATGCCAGGAACTATACAAGTTTCAGTTCTGGGTCTTATTGATGTTC--ACA-------CA 51
||||||||||| ||||||||||||||||| |||||||| ||||||| ||| ||
Sbjct 37 ATGCCAGGAACAATACAAGTTTCAGTTCTTGGTCTTATCGATGTTCAGACATCTTCTCCA 96
Query 52 GCTTCTTCAAACACTTCCATTAAAGTTTCTATGGGGAAGCTAGAGTATCGAACTTCAAAT 111
| ||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||| ||
Sbjct 97 GGTTCTTCAAACACTTCCATTAAAGTTGCTATGGGAAAGCTAGAGTATCAAACTTCAGAT 156
Query 112 TCAGGAGACTACATTTTTCCAGTTACGAGGCTCCGAGAAAATTTGATTGTTACTCTGTTA 171
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 157 TCAGGAGACTACATTTTTCCAGTTACGAGGCTCCGAGAGAATTTGATTGTTACTCTGTTA 216
Query 172 GATGTCAATGGAAACCAGATATTACACAAAGAGATAGAGACAAGAATGATAATAGAGAGT 231
||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 217 GATGTTAATGGAAACCAAATATTACAGAAAGAGATAGAGACAAGAATGATAATAGAGAGT 276
Query 232 GGTTTCTTGGAAGAGAAACTTTCATTCAGTGGCTATGGAAATGTACAATTGAAAATGCAG 291
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 277 GGTTTCTTGGAAGAGAAACTTTCATTCAATGGCTATGGAAATGTTCAATTGAAAATGCAG 336
Query 292 TTTGTTCTCAGCGAAGAAGATCGAAATCGCATACGTTTCCTGAGACAATCGGCATTGCGA 351
||||||||||| || |||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 337 TTTGTTCTCAGTGAGGAAGATCGAAATCGCATACGTTTCTTGAGACAATCTGCATTGCGA 396
Query 352 AAGAAGCACGAGGAGCTTGTTAATGGCAGTTCTTTTACCAAATCTAAAAGCATTGCTTCA 411
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 397 AAGAAGCATGAGGAGCTTGTCAATGGCAGTTCTTTTACCAAATCTAAAAGCATTGCTTCA 456
Query 412 GATTTGTCTTCTTTAAGTTCAATGCAAACCCGAGAAATCGTGGCTGTTGCTACTAATCCA 471
|||||||| |||||||||||||||||| | ||||| |||||||||||||||| | | ||
Sbjct 457 GATTTGTCATCTTTAAGTTCAATGCAATCTCGAGACATCGTGGCTGTTGCTAGT--T-CA 513
Query 472 AAGACAAATCTTGGTCTGTCTCAAGAAACCGAGCGT-AAAAATAATGCAGATAGAGATAC 530
||||||||||||||||||||||||||||| ||| | |||| |||||||||||||||| |
Sbjct 514 AAGACAAATCTTGGTCTGTCTCAAGAAACAAAGC-TGAAAACTAATGCAGATAGAGATCC 572
Query 531 GGTTTCGTCGAATCTTATAATGTGGAAGCCTGAAGTAAAAGATACAGTTGAGAAGACGAA 590
||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 573 GGTTTCGTCAAATCTTATAATGTGGAAGCCTGAAGTAAAAGATTCAGTCGAGAAGACGAA 632
Query 591 AATTCAACTATCTTCATCAGATGTTTCTTCAAGCAAGAAGCTTCCGGAGGTTaaaaaaaC 650
|||||||||||||| |||||||||||||||||||||||| |||| |||||| |||||||
Sbjct 633 TATTCAACTATCTTCTTCAGATGTTTCTTCAAGCAAGAAGGTTCCCGAGGTT-AAAAAAC 691
Query 651 T-GCAAGTGTATTGTTAGTGAAGCAAGAAGATAAGGGTTTGAGCAAACCAAGCAAGAAGC 709
| | |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 692 TCGAAAGTGTATCGTTAGTGAAGCAAGAAGATAAGGGTTTGAACAAACCAAGCAAGAAGC 751
Query 710 TTCATGAGGTTAAAACCCCGGAGAGAGTATTGTTAGTGAAGCAAGAAGATAAGGGTTTGA 769
|| || | | | || ||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 752 TT-AT-A-G-----AGGCC-GAGAGTGTATTGTTAGTGAAGCAGGAAGATAAGGGATTGA 802
Query 770 GCAAACCAATCAAGAAGCTTACGGAGGCTAAAAACACCGAGTGTGTATCGTTAGTGAAGC 829
||||||| | |||||| |||| |||||||||| | ||||| ||||||||||||||||||
Sbjct 803 GCAAACCGAGAAAGAAGTTTACAGAGGCTAAAACCCCCGAGAGTGTATCGTTAGTGAAGC 862
Query 830 AAGAAGATACGGGTTTGAGCAAACCGGAAAGAAATCCTAAACGGAAGTCAATGAGGCGGA 889
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 863 AAGAAGAGACGGGTTTGAGCAAACCGGAAAGAAAGCCTAAACGGAAGTCAATGAGGCGGA 922
Query 890 GTATGTCAGACTCAAATTTGAACAATGTGCGGAAAATGATAAGCAACTTTGAGGTCAAAG 949
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 923 GTATGTCAGATTCAAATTTGAACAATGTGCGGAAAATGATTAGCAACTTTGAGGTCAAAG 982
Query 950 TTACTCAGGATACCAAAATTCGGACAGCGAAGATTCAAACTGGTTCTTATAAAGATGCGG 1009
||||||||||||| |||||| ||||||||||||||||||||| ||||| |||||||||||
Sbjct 983 TTACTCAGGATACAAAAATTAGGACAGCGAAGATTCAAACTGATTCTTGTAAAGATGCGG 1042
Query 1010 AGGAGAAAACTAAGGCGCAACCACAAGCGGAAAGCACTGTGAATCTAGAGAAACT-GGAA 1068
|||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||
Sbjct 1043 AGGAGAAAACTAAGGCGCAACCACCAGCGGAAAGCACTGTGAATCTAGAGAAA-TCGGAA 1101
Query 1069 GAAAGTAAGATCATAAGCTTTGAGAATATGGAGAAGTCAGTGTGTAGAGATAACACAGAT 1128
||||| ||||| ||||||||| | ||||||||||||||||||||||| ||||||||||||
Sbjct 1102 GAAAGGAAGATAATAAGCTTTAATAATATGGAGAAGTCAGTGTGTAGTGATAACACAGAT 1161
Query 1129 AGATGTGATGATTTAGTAATATTTTCAGGAGATGAAAGGTCAATAGTTATAGAGGAGAAG 1188
||||||||||||||||||||| ||||| ||||||||||| |||| | ||||||||| |||
Sbjct 1162 AGATGTGATGATTTAGTAATAGTTTCAAGAGATGAAAGGACAATGGATATAGAGGACAAG 1221
Query 1189 AGACTTGAACATAACACTAGAAGAAGTGACTTTTTAAGTACGCAAAGACGAAGTTCGGTG 1248
|| ||||| |||| |||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1222 AGTCTTGAGCATAGCACTAGAAGAAGTGACTTGTTAAGTACGCAAAGACGAAGTTTGGTG 1281
Query 1249 GTGA-AAGTAAGGGATGATGAGAAGAAACCA-AACAAATCTGTGTGTTTGAAAGATTCTC 1306
|| | ||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 1282 GT-AGAAGTAAGGGATGATGAGAAGAAA-CAGAACAAATCTGTGTGGTTGAAAGATTCTC 1339
Query 1307 AACTTGAGAATGCACGAGGATCTCGTCTCTGGATATTTCCAGATGAGGCAAAAGATTTGT 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 AACTTGAGAATGCACGAGGATCTCGTCTCTGGATATTTCCAGATGAGGCAAAAGATTTGT 1399
Query 1367 CTTGCGAAACAGATTTAGGAACAAGAC----G--TTTGGATTTAGCAGAAGCATATATGT 1420
|||||||||||||||||||||||||| | ||||||||||||||||||| || |||
Sbjct 1400 GTTGCGAAACAGATTTAGGAACAAGACATTTGGATTTGGATTTAGCAGAAGCAAATTTGT 1459
Query 1421 TACAGAAGAGGATAGAAGAGTCTACTAGGGAAAACATCGGTGAGAGGGGATTCCGCTGCA 1480
|||| || |||||||| ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1460 TACAAAAAAGGATAGACGAGTCTACTAGGGAAAACATCGGTGAGAGGGGAAGCCGTTGCA 1519
Query 1481 TAAGCATCGCAAAAATAGATAGTAACAACAAGTGGAAGAACATAGAGCGATCGAAGAAAC 1540
||| |||||| |||||| |||| ||||||||||||| |||||| |||||||| |||||||
Sbjct 1520 TAAACATCGCGAAAATAAATAGCAACAACAAGTGGACGAACATTGAGCGATCAAAGAAAC 1579
Query 1541 AAAAGTCGGAGAATTCTGCAGAGTCAGAAAGTTCAGGACGACCTGTTGGACAAGTGATGC 1600
||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1580 AAAAGTCTGAGAACTCTGCAGAGTCAGAAAGTTCAGGACGACCTGTTGGGCAAGTGATGC 1639
Query 1601 GTGCGTTGATCGTGGCGGGTTTTGCAGGGTTAGTGTTTTTGACACGACAAAGAACTTAA 1659
||||||||||||||| |||||||||||| || |||||||||||||||||| ||||||||
Sbjct 1640 GTGCGTTGATCGTGGTGGGTTTTGCAGGATTGGTGTTTTTGACACGACAATGAACTTAA 1698
Score = 137 bits (74), Expect = 3e-31
Identities = 138/167 (83%), Gaps = 12/167 (7%)
Strand=Plus/Plus
Query 698 CAAGCAAGAAGCTTCATGAGGTT-AAAACCCCGGAGAGAGTATTGTTAGTGAAGCAAGAA 756
||||||||||| ||| |||||| |||| | | || || |||| ||||||||||||||||
Sbjct 662 CAAGCAAGAAGGTTCCCGAGGTTAAAAAACTC-GAAAGTGTATCGTTAGTGAAGCAAGAA 720
Query 757 GATAAGGGTTTGAGCAAACCAATCAAGAAGCTTACGGAGGCTAAAAACACCGAGTGTGTA 816
||||||||||||| |||||||| ||||||||||| ||||| | ||| |||||
Sbjct 721 GATAAGGGTTTGAACAAACCAAGCAAGAAGCTTATAGAGGC------C---GAGAGTGTA 771
Query 817 TCGTTAGTGAAGCAAGAAGATACGGGTTTGAGCAAACCG-GAAAGAA 862
| |||||||||||| ||||||| ||| |||||||||||| |||||||
Sbjct 772 TTGTTAGTGAAGCAGGAAGATAAGGGATTGAGCAAACCGAGAAAGAA 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81977489985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5