BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg917507 Length=1305 Score E Sequences producing significant alignments: (Bits) Value AT5G57930.2 | Symbols: APO2 | Arabidopsis thaliana protein of u... 2008 0.0 > AT5G57930.2 | Symbols: APO2 | Arabidopsis thaliana protein of unknown function (DUF794) | chr5:23454604-23456493 FORWARD LENGTH=1557 Length=1557 Score = 2008 bits (1087), Expect = 0.0 Identities = 1256/1333 (94%), Gaps = 29/1333 (2%) Strand=Plus/Plus Query 1 ATGTCGATAACTTACTCCGCTATTTCCTCTGGTACA--------G-TTTCACCTAAAAGT 51 ||||||||||| |||||||||||||||||| ||||| | ||||||| |||||| Sbjct 87 ATGTCGATAACGTACTCCGCTATTTCCTCTAGTACAGTTTCTGGGTTTTCACCAAAAAGT 146 Query 52 GTACCTTTTGCTATTCGTAGCGTAACCAGGAGGCAATTTCTTAATCCCAACCCGTTTTCT 111 |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| | Sbjct 147 GTACCTTTTGCTATTCATAGCGTAACCAGGAGGCAATTTCTTAATCCCAACACGTTTTAT 206 Query 112 AGATTCGGGTTCTCTCCTTCTCTTCAGGGAAGTAGCATTGAGTTTAG-----AGTTG--- 163 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 207 AGATTTGGGTTCTCTCCTTCTCTTCAGGGAAGTAGCATTGAGTTTAGCCTTCAGTTGAAT 266 Query 164 T---GA-------TTAGTAAAGAGCGTCGATCTCTTCCATTGGTTGTGAGAAGTGATCGT 213 | || |||||||||||||||||||||| ||||| |||||||||| ||||||| Sbjct 267 TCAAGAGTTGTGCTTAGTAAAGAGCGTCGATCTCTGCCATTAGTTGTGAGAAATGATCGT 326 Query 214 CCTCAGAATGAAGACTTACCTAAGCAGTACACAAGGCGAGAGAAGAAACCTTTTCCGGTG 273 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 327 CCTCAGAATGAAGACTTACCTAAGCAGTACACAAGGCGAGAGAAGAAACCTTTCCCAGTC 386 Query 274 CCAATTGTGGACCTGAGACGAGCTGCGAGGGAGAGAGTCAAGAACAACAAAGACAAACCT 333 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 387 CCTATTGTGGACCTGAGACGAGCTGCGAGGGAGAGAGTCAAGAACAACAAAGACAAACCT 446 Query 334 AAGAGGCCTCTACCTCCGCCTAAAAATGGTATGGTTGTGAAGAGCCTTGTGCCTCTTGCT 393 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 447 AAGAGACCTCTACCTCCGCCTAAAAATGGTATGGTTGTGAAGAGCCTTGTGCCTCTTGCT 506 Query 394 TATAAAGTGTACAATGCAAGAATCAGATTGATCAACAATCTCCACCGCCTCATGAAAGTT 453 |||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 507 TATAAAGTATACAATGCAAGAATCAGATTGATCAACAATCTCCACCGGCTTATGAAAGTT 566 Query 454 GTTCGTGTTAATGCTTGTGGGTGGTGCAATGAGATTCATGTTGGACCTTACGGGCATCCA 513 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 567 GTTCGTGTTAATGCTTGTGGGTGGTGCAATGAGATTCATGTTGGACCTTATGGGCATCCA 626 Query 514 TTTAAGTCGTGTAAAGGTCCCAATGCTTCCCAAAGGAAAGGTCTTCATGAATGGACAAAC 573 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 627 TTTAAGTCGTGTAAAGGTCCCAATACTTCCCAAAGGAAAGGTCTTCATGAATGGACTAAC 686 Query 574 TCAGTTATTGAGGACGTTATTGTTCCTCTTGAAGCCTATCACCTCTATGACCGTCTTGGC 633 || ||||||||||||||||||||||||||||||||||||||||| | |||||| |||||| Sbjct 687 TCGGTTATTGAGGACGTTATTGTTCCTCTTGAAGCCTATCACCTTTTTGACCGCCTTGGC 746 Query 634 AAGCGTATCCGTCACGATGAGAGATTCTCGATTCCACGAGTTCCTGCTGTAGTTGAGCTC 693 |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 747 AAGCGTATCCGTCATGATGAAAGATTCTCGATTCCCCGAGTTCCTGCTGTAGTTGAGCTC 806 Query 694 TGCATTCAGGGCGGCGTTGAAAT-CCCTGAATTTCCAACAAAAAGGAGAAGAAAACCAAT 752 ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| || Sbjct 807 TGCATTCAGGGCGGCGTTGAAATACCC-GAATTTCCAGCAAAAAGGAGAAGAAAACCGAT 865 Query 753 TATCCGCATTGGCAAAAGCGAGTTTGTTGATGCAGATGAAACTGAATTGCCTGATCCAGA 812 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 866 TATCCGCATTGGCAAAAGCGAGTTTGTTGATGCAGATGAAACTGAATTGCCTGATCCAGA 925 Query 813 GCCTCAGCCTCCTCCAGTGCCATTGTTAACTGAGTTACCTGTCTCTGAGATCACTCCTCC 872 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 926 GCCTCAGCCTCCTCCAGTGCCATTGTTAACTGAGTTACCTGTCTCAGAGATCACTCCCCC 985 Query 873 ATCTAGCGAAGAAGAAACGGTCTCCCTAGCCGAAGAAACATTACAGGCCTGGGAAGAAAT 932 |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 986 ATCTAGCGAAGAAGAAACAGTCTCCTTAGCCGAAGAAACATTACAGGCCTGGGAAGAAAT 1045 Query 933 GAGAGCAGGAGCCAAAAAGCTGATGAGGATGTACAGGGTTAGGGTTTGTGGGTACTGTCC 992 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1046 GAGAGCAGGAGCCAAAAAGCTGATGAGGATGTACAGGGTTAGGGTCTGTGGGTACTGTCC 1105 Query 993 CGAGGTTCACGTAGGTCCAACGGGGCACAAGGCCCAGAACTGTGGTGCATTCAAACACCA 1052 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1106 AGAGGTTCACGTAGGTCCAACGGGACACAAGGCCCAGAACTGTGGTGCATTCAAGCACCA 1165 Query 1053 ACAGCGGAATGGCCAGCATGGTTGGCAATCTGCAGTCCTTGACGACTTGATACCACCAAG 1112 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 1166 ACAGCGGAATGGCCAGCATGGTTGGCAATCTGCAGTACTTGACGACTTGATACCGCCAAG 1225 Query 1113 ATATGTTTGGCATGTTCCTGATGTGAATGGGCCGCCGTTGCAGCGAGAGCTACGAAGCTT 1172 ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 1226 ATATGTTTGGCATGTTCCTGATGTGAATGGGCCACCGATGCAGCGAGAGCTACGAAGCTT 1285 Query 1173 CTACGGGCAAGCACCTGCTGTGGTGGAGATATGCGCTCAGGCTGGTGCCGTTGTACCTGA 1232 ||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| Sbjct 1286 CTACGGGCAAGCACCTGCTGTTGTGGAGATATGTGCTCAGGCTGGCGCTGTTGTACCTGA 1345 Query 1233 GCAGTATAGAGCTACAATGAGACTGGAGGTTGGAATTCCTTCGAGTGTGAAAGAAGCTGA 1292 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1346 GCATTATAGAGCTACAATGAGACTGGAGGTTGGAATTCCTTCGAGTGTGAAAGAAGCTGA 1405 Query 1293 GATGGTCGTTTGA 1305 |||||| |||||| Sbjct 1406 GATGGTTGTTTGA 1418 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64206497055 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5