BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917653
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59160.1 | Symbols: TOPP2, PPO | type one serine/threonine p... 1568 0.0
AT3G46820.1 | Symbols: TOPP5 | type one serine/threonine protei... 1070 0.0
> AT5G59160.1 | Symbols: TOPP2, PPO | type one serine/threonine
protein phosphatase 2 | chr5:23879349-23881688 FORWARD LENGTH=1468
Length=1468
Score = 1568 bits (849), Expect = 0.0
Identities = 909/939 (97%), Gaps = 0/939 (0%)
Strand=Plus/Plus
Query 1 ATGGCGCAACAAGGGCAGGGAAGCATGGACCCTGCCGTTCTCGATGATATCATTCGTCGT 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 219 ATGGCGCAACAAGGGCAGGGAAGCATGGACCCTGCCGCTCTCGATGATATCATTCGTCGT 278
Query 61 TTGTTGGATTACAGAAACCCTAAGCCTGGTACGAAGCAGGTTATGCTCACCGAGTCTGAG 120
|||||||||||||||||||||||||||||||| || |||| |||||||| ||||||||||
Sbjct 279 TTGTTGGATTACAGAAACCCTAAGCCTGGTACCAAACAGGCTATGCTCAACGAGTCTGAG 338
Query 121 ATCCGACAGCTTTGCATCGTCTCTAGAGAGATTTTCCTTCAACAGCCTAACCTCCTTGAG 180
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 339 ATCCGTCAGCTTTGCATCGTCTCTAGAGAGATTTTTCTTCAACAGCCTAACCTTCTTGAG 398
Query 181 CTCGAAGCTCCTATCAAGATCTGCGGTGATATTCATGGACAATACTCTGATCTATTGAGG 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 399 CTCGAAGCTCCTATCAAGATCTGCGGTGATATTCATGGACAATACTCAGATCTATTGAGG 458
Query 241 CTGTTTGAGTATGGAGGCTTCCCACCTACAGCTAACTATTTATTCTTAGGAGATTACGTG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 CTGTTTGAGTATGGAGGCTTCCCACCTACAGCTAACTATTTATTCTTAGGAGATTACGTA 518
Query 301 GACCGCGGCAAGCAGAGTTTGGAGACTATTTGTCTTCTGCTTGCCTACAAAATCAAATAC 360
||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 519 GACAGGGGCAAGCAGAGTTTGGAGACTATTTGTCTTCTGCTTGCTTACAAAATCAAATAC 578
Query 361 CCCGAGAACTTTTTTCTTCTTAGAGGAAACCACGAATGTGCTTCTATTAACAGAATCTAT 420
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 579 CCTGAGAACTTTTTTCTTCTAAGAGGAAACCACGAATGTGCTTCTATTAACAGAATCTAT 638
Query 421 GGATTCTATGATGAATGTAAACGTCGATTCAGTGTGAGACTCTGGAAAGTGTTTACAGAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 GGATTCTATGATGAATGTAAACGTCGATTCAGTGTGAGACTCTGGAAAGTGTTTACAGAT 698
Query 481 TCTTTTAACTGTCTCCCCGTCGCTGCTGTTATAGACGATAAGATATTATGTATGCACGGT 540
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 699 TCTTTTAACTGTCTCCCTGTTGCTGCTGTTATAGACGATAAGATATTATGTATGCACGGT 758
Query 541 GGGCTTTCTCCCGATTTGACCAATGTGGAAGAGATTAAGAACATTAAGCGACCTACCGAT 600
|| |||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||
Sbjct 759 GGCCTTTCTCCCGATTTGACCAACGTGGAACAGATTAAGAACATTAAGCGACCTACTGAT 818
Query 601 GTTCCAGACTCTGGTTTGCTCTGTGATCTGCTTTGGTCTGATCCAAGCAAAGATGTCAAA 660
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 GTTCCTGACTCTGGTTTGCTCTGTGATCTGCTTTGGTCTGATCCAAGCAAAGATGTCAAA 878
Query 661 GGTTGGGGGATGAATGATCGTGGAGTCTCTTACACGTTTGGGCCTGACAAAGTCGCCGAA 720
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 879 GGTTGGGGGATGAATGACCGTGGAGTCTCTTACACGTTTGGCCCTGACAAAGTCGCGGAG 938
Query 721 TTTCTAATAAAGAATGATATGGACCTCATCTGCCGTGCCCACCAGGTTGTAGAGGATGGG 780
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 939 TTTCTAATAAAGAATGATATGGATCTCATCTGCCGTGCCCACCAGGTTGTAGAGGATGGA 998
Query 781 TATGAGTTTTTCGCCGATAGACAGCTTGTTACGATATTTTCTGCTCCCAACTACTGCGGT 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 999 TATGAGTTTTTCGCCGATAGACAGCTTGTTACGATATTTTCTGCTCCCAACTACTGTGGT 1058
Query 841 GAATTTGACAATGCTGGTGCTATGATGAGTGTTGATGAAAGTTTAATGTGCTCTTTCCAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 GAATTTGACAATGCTGGTGCTATGATGAGTGTTGATGAAAGTTTAATGTGCTCTTTCCAA 1118
Query 901 ATTCTTAAGCCTGCTGATCGAAGGCCCCGGTTCTTATGA 939
|||||||||||||||||||||| ||||||||||||||||
Sbjct 1119 ATTCTTAAGCCTGCTGATCGAAAGCCCCGGTTCTTATGA 1157
> AT3G46820.1 | Symbols: TOPP5 | type one serine/threonine protein
phosphatase 5 | chr3:17241781-17244277 REVERSE LENGTH=1583
Length=1583
Score = 1070 bits (579), Expect = 0.0
Identities = 832/952 (87%), Gaps = 26/952 (3%)
Strand=Plus/Plus
Query 1 ATGGCGCAACAAGGGCAGGGAAGCATGGACCCTGCCGTTCTCGATGATATCATTCGTCGT 60
||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 286 ATGGCGCAACAAGGGCAGGGAAGCATGGACCCTGCTGTTCTCGACGACATCATTCGTCGT 345
Query 61 TT-GTTGGATTACAGAAACCCT-AAGCCTGGTACGAAGCAGGTTATGCTCACCGAGTCTG 118
|| || |||||| |||||||| ||| |||| || || || | |||||||| ||| ||||
Sbjct 346 TTACTT-GATTACCGAAACCCTAAAG-CTGGGACCAAACAAGCTATGCTCAACGATTCTG 403
Query 119 AGATCCGACAGCTTTGCATCGTCTCTAGAGAGAT-TTTCCTTCAACAGCCTAACCTCCTT 177
||||||||||||||||| | |||||||||||||| ||| |||||||||||| || |||
Sbjct 404 AGATCCGACAGCTTTGCTTTGTCTCTAGAGAGATATTT-CTTCAACAGCCTTGTCTTCTT 462
Query 178 GAGCTCGAAGCTCCTATCAAGATCTGCGGTGATATTCATGGACAATACTCTGATCTATTG 237
||||||| || ||| | ||||||||||||||||||||||| |||||||| ||| |||||
Sbjct 463 GAGCTCGCTGCCCCTGTTAAGATCTGCGGTGATATTCATGGTCAATACTCAGATTTATTG 522
Query 238 AGGCTGTTT-GAGTATGGAGGCTTCCCACCTACAGCTAACTATTTATTCTTAGGAGATTA 296
||||| ||| ||||||||||| ||||| ||| |||| ||||| |||||||||||||||||
Sbjct 523 AGGCT-TTTCGAGTATGGAGGTTTCCCTCCTGCAGCAAACTACTTATTCTTAGGAGATTA 581
Query 297 CGTGGACCGCGGCAAGCAGAGTTTGGAGACTATTTGTCTTCTGCTTGCCTACAAAATCAA 356
||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 582 CGTTGACCGCGGAAAGCAGAGTTTGGAGACTATTTGTCTTCTGCTTGCTTACAAGATCAA 641
Query 357 ATACCCCGAGAACTTTTTTCTTCTT-AGAGGAAACCACGAATGTGCTTCTATTAACAGAA 415
|||||| || |||||||||| |||| ||||||||||| || ||||| |||||||||||||
Sbjct 642 ATACCCTGAAAACTTTTTTC-TCTTAAGAGGAAACCATGAGTGTGCATCTATTAACAGAA 700
Query 416 TCTATGGATTCTATGATGAATGTAAACGTCGATTCAGTGTG-AGACTCTGGAAAGTGTTT 474
| || ||||||||||| ||||||||||| |||||| ||| || |||||||||||||||
Sbjct 701 TTTACGGATTCTATGACGAATGTAAACGAAGATTCAACGTGAAG-CTCTGGAAAGTGTTT 759
Query 475 ACAGATTCTTTTAACTGTCTCCCCGTCGCTGCTGTTATAGACGATAAGATA-TTATGTAT 533
|| ||| |||||||||||||||| || |||||||| ||||| || |||||| || |||||
Sbjct 760 ACCGATACTTTTAACTGTCTCCCTGTGGCTGCTGTCATAGATGAAAAGATACTT-TGTAT 818
Query 534 GCACGGTGGGCTTTCTCCCGATTTGACCAATGTGGAAGAGATTAAGAACATTA-AGCGAC 592
||| ||||| || ||||| || |||| |||||||||| | |||||||||| || |||| |
Sbjct 819 GCATGGTGGACTATCTCCTGAGTTGATCAATGTGGAACAAATTAAGAACA-TAGAGCGTC 877
Query 593 CTACCGATGTTCCAGACTCTGGTTTGCTCTGTGATCTGCTTTGGTCTGATCCAAGCAAAG 652
| || |||||||||||| |||||||||||||||| || |||||||||||||| || ||||
Sbjct 878 CAACTGATGTTCCAGACGCTGGTTTGCTCTGTGACCTTCTTTGGTCTGATCCTAGTAAAG 937
Query 653 ATGTCAAAGGTTGGGGGATGAATGATCGTGGAGTCTCTTACACGTTTGG-GCCTGACAAA 711
|||||||||| |||||||||||||||||||| ||||| ||||| ||||| | ||||||||
Sbjct 938 ATGTCAAAGGCTGGGGGATGAATGATCGTGGTGTCTCCTACACTTTTGGTG-CTGACAAA 996
Query 712 GTCGCCGAATTTCTAATAAAGAATGATATGGACCTCA-TCTGCCGTGCCCACCAGGTTGT 770
|| || || ||| ||||||||||||||||||| | | |||| |||||||||||||||||
Sbjct 997 GTTGCTGAGTTTTTAATAAAGAATGATATGGA-TTTAGTCTGTCGTGCCCACCAGGTTGT 1055
Query 771 AGAGGATGGGTATGAGTT-TTTCGCCGATAGACAGCTTGTTACGATATTTTCTGCTCCCA 829
|||||||||||||||||| ||| || |||||||||||||| || || ||||||||||| |
Sbjct 1056 AGAGGATGGGTATGAGTTCTTT-GCTGATAGACAGCTTGTGACTATGTTTTCTGCTCCAA 1114
Query 830 ACTACTGCGGTGAATTTGACAATGCTGGTGCTA-TGATGAGTGTTGATGAAAGTTTAATG 888
||||||| ||||||||||||||||| ||||| | |||||||||| || ||||||||||||
Sbjct 1115 ACTACTGTGGTGAATTTGACAATGCGGGTGC-ATTGATGAGTGTCGACGAAAGTTTAATG 1173
Query 889 TGCTCTTTCCAAATTCTTAAGCCTGCTG-ATCGAAGGCCCCGGTTCTTATGA 939
||||||||||||||||||||||||| || |||| ||| | |||||||| |||
Sbjct 1174 TGCTCTTTCCAAATTCTTAAGCCTG-TGGATCGGAGGTCGCGGTTCTTTTGA 1224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45914010358
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5