BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917976
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62210.1 | Symbols: | Embryo-specific protein 3, (ATS3) | c... 935 0.0
> AT5G62210.1 | Symbols: | Embryo-specific protein 3, (ATS3) |
chr5:24986327-24987489 REVERSE LENGTH=878
Length=878
Score = 935 bits (506), Expect = 0.0
Identities = 619/672 (92%), Gaps = 13/672 (2%)
Strand=Plus/Plus
Query 12 CTCTCTCTCATCTATCATCCTCATCCTCCTTGTTCTATCCTTAACTGATCCCATTCTTTC 71
|||||||||||| ||||||| | |||||||| || | ||| ||| ||||||||| |||
Sbjct 21 CTCTCTCTCATC---CATCCTCCTTCTCCTTGTACTCTGCTTCACTCATCCCATTCCTTC 77
Query 72 TCTAACCTATC-AGCCACTAATCTCTTCTCTTGATCTTCATGAAGAAGAAAGCTGCCCTT 130
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 TCTAACCT-TCGAGCCACTAATCTCTTCTCTTGATCTTCATGAAGAAGAAAGCTGCCCTT 136
Query 131 ACACTGTAATTGTTACTACAAGCTGTTTCTCTCCTGATTGGTCTAGAGATCAGATCACTA 190
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 137 ACACTGTAATTGTTACCACAAGCTGTTTCTCTCCTGATTGGTCTAGAGATCAGGTCACTA 196
Query 191 TTGCTTTGGGTGACGCCAACGGTAACAAGGTAGTCGCACCGAGACTAGACGAACCACTAA 250
| ||||||||||||||| ||| |||| |||| |||||||||||||||||| |||| ||||
Sbjct 197 TCGCTTTGGGTGACGCCGACGATAACCAGGTGGTCGCACCGAGACTAGACAAACCGCTAA 256
Query 251 GTGGAGGAGGAGGTTTCGAGAAATGTTCATCGGACACATTCCAAGTCAAAGGTGAATGTC 310
|||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 257 GTGGAGGAGGTGGTTTTGAGAAATGTTCATCGGACACATTCCAAGTCAAAGGTAAATGTC 316
Query 311 TCAACACTATCTGTTCCGTCTACATCTACCGTTCCGGTACCGACGGCTGGATCCCGGAGA 370
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 TCAACACTATCTGCTCCGTCTACATCTACCGTTCCGGTACCGACGGCTGGATCCCGGAGA 376
Query 371 CCGTCGAAATCTACAAGGAAGGTTCCAAATCCGTGAAATTTGATTTCAACAAAAACGTCC 430
||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 377 CCGTCGAGATATACAAGGAAGGTTCCAAATCCGTGAAATTCGATTTCAACAAGAACGTCC 436
Query 431 CTGAGAACATTTGGTACGGCAACAAC-AGTTGCAACAACACCGGTTTGCCACCGGATTCC 489
|||| |||||||||||||| |||||| | ||| |||||||||| |||||||||| ||||
Sbjct 437 CTGAAAACATTTGGTACGGAAACAACTA-TTGTAACAACACCGATTTGCCACCGCCTTCC 495
Query 490 CCGGATTTCCCTCCGTTTTCTCCATCTGTCCCACCGCCTTCACCGCCTTATTTTCCTCCT 549
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 496 CCGGATTTCCCTCCGTTTTCTCCATCCATCCCACCGCCTTCACCACCTTATTTTCCTCCT 555
Query 550 GAACCACCTTCAATCCCACCGCCACCACCA---TCACCGCCGTCTGCTGCCTCTGGACGT 606
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 556 GAACCACCTTCAATCCCGCCGCCACCACCACCATCACCGCCGTCTGCTGCCTCTGGACGT 615
Query 607 GGAAGTGGTCAGAgtttggttgttgcatttgctgctgcggttgtgtttgtgtttgcggct 666
|||||||||||||||||||||||||| |||||||| | ||||||||| ||||||||||
Sbjct 616 GGAAGTGGTCAGAGTTTGGTTGTTGCGTTTGCTGC-GT--TTGTGTTTGCGTTTGCGGCT 672
Query 667 atgtttgtttgA 678
|| ||||||||
Sbjct 673 GTGGTTGTTTGA 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32802897991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5