BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918162
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63790.1 | Symbols: ANAC102, NAC102 | NAC domain containing ... 1280 0.0
> AT5G63790.1 | Symbols: ANAC102, NAC102 | NAC domain containing
protein 102 | chr5:25526509-25528013 REVERSE LENGTH=1317
Length=1317
Score = 1280 bits (693), Expect = 0.0
Identities = 777/816 (95%), Gaps = 12/816 (1%)
Strand=Plus/Plus
Query 1 ATGAAGGCGGAGTTGAATTTGCCGGCGGGATTCCGATTTCATCCGACGGACGAAGAGCTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 ATGAAGGCGGAGTTGAATTTGCCGGCGGGATTCCGATTTCATCCGACGGACGAAGAGCTT 189
Query 61 GTTAAGTTCTATCTTTGCCGGAGATGCGCGTCGGAACCGATTAACGTTCCGGTTATCGCA 120
|| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 190 GTCAAGTTCTATCTTTGCCGGAGATGTGCGTCAGAACCGATTAACGTTCCGGTTATCGCA 249
Query 121 GAGATTGATCT-GTATAAATTCAATCCATGGGAGCTTCCAGAAATGGCGTTGTACGGAGA 179
|||||||| || ||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 250 GAGATTGA-CTTGTACAAATTCAATCCATGGGAGCTTCCAGAAATGGCGTTGTACGGTGA 308
Query 180 GAAAGAATGGTACTTCTTCTCACATAGAGACCGGAAATACCCAAACGGTTCGAGACCAAA 239
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 309 GAAAGAATGGTACTTCTTCTCGCATAGAGACCGGAAATACCCAAACGGGTCGAGACCAAA 368
Query 240 CCGGGCAGCTGGAAGCGGTTATTGGAAAGCGACTGGAGCAGATAAACCGATCGGAAAACC 299
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 369 CCGGGCAGCTGGAACCGGTTATTGGAAAGCGACTGGAGCTGATAAACCGATCGGAAAACC 428
Query 300 GAAGACATTAGGGATTAAGAAAGCACTGGTCTTCTACGCAGGAAAAGCTCCGAAAGGGGT 359
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 429 GAAGACGTTAGGGATTAAGAAAGCACTCGTCTTCTACGCAGGAAAAGCTCCGAAAGGGAT 488
Query 360 TAAAACGAATTGGATTATGCACGAGTATCGTCTCGCTAATGTCGATCGATCTGCTTCTAC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 TAAAACGAATTGGATTATGCACGAGTATCGTCTCGCTAATGTCGATCGATCTGCTTCTAC 548
Query 420 CACCAACAAGAAGAACAATTTGCGACTTGATGATTGGGTTTTGTGTCGGATTTACAATAA 479
|| | |||||||||||| || |||||||||||||||||||||||||||| ||||||||
Sbjct 549 CA--A-CAAGAAGAACAACTTAAGACTTGATGATTGGGTTTTGTGTCGGATATACAATAA 605
Query 480 GAAAGGAACAATGGAGAAGTATT-ATCCGGCGGCGGATGAGAAACCGACGGCGAAGATGA 538
||||||||||||||||||||||| | |||||||||| |||||||||||||| |||||||
Sbjct 606 GAAAGGAACAATGGAGAAGTATTTA-CCGGCGGCGGCTGAGAAACCGACGGAAAAGATGA 664
Query 539 GTACGTCGGACTCGAGATGCTCAAGTCACGTGATTTCACCGGACGTCACGTGTTCCGATA 598
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 665 GTACGTCGGACTCAAGATGCTCAAGTCACGTGATTTCACCGGACGTCACGTGTTCTGATA 724
Query 599 ACTGGGAGGTTGAGAGTGAGCCCAAATGGATTAATCTGGAAGACGCGTTAGAGGCGTTTA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 725 ACTGGGAGGTTGAGAGTGAGCCCAAATGGATTAATCTGGAAGACGCGTTAGAGGCATTTA 784
Query 659 ATGA---CACGTCCATGTTTAGTTCCATTGATTTGTTGCAAAATGACGCCTTTGTCCCTC 715
|||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 785 ATGATGACACGTCCATGTTTAGTTCCATTGGTTTGTTGCAAAATGACGCCTTTGTTCCTC 844
Query 716 AGTT-CGCGTACCAGTCCTCCGAGTTCGTCGATTCGTTTCAGGACCCGTTGGAGCAGAAA 774
|||| | ||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 845 AGTTTCA-GTACCAGTCCTCCGATTTCGTCGATTCGTTTCAGGACCCGTTCGAGCAGAAA 903
Query 775 CCGTTCTTGAATTGGAATTTTGCTCCTCAAGGGTAA 810
||||||||||||||||||||||||||||||||||||
Sbjct 904 CCGTTCTTGAATTGGAATTTTGCTCCTCAAGGGTAA 939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39433805395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5