BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg918479 Length=1632 Score E Sequences producing significant alignments: (Bits) Value AT5G66920.1 | Symbols: sks17 | SKU5 similar 17 | chr5:26722823... 2590 0.0 AT2G23630.1 | Symbols: sks16 | SKU5 similar 16 | chr2:10052566... 172 7e-42 AT5G48450.1 | Symbols: sks3 | SKU5 similar 3 | chr5:19632791-1... 76.8 6e-13 > AT5G66920.1 | Symbols: sks17 | SKU5 similar 17 | chr5:26722823-26725626 FORWARD LENGTH=2037 Length=2037 Score = 2590 bits (1402), Expect = 0.0 Identities = 1552/1626 (95%), Gaps = 4/1626 (0%) Strand=Plus/Plus Query 9 AAAAACAGCATCCTTGCTTAATCCTCTTCTTCTTCTTGGAGCTTTGACTCTTTTGAGCAG 68 ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 158 AAAAACAACATCCTTGCTTAATCATCTTCTTCTTCTTGGAGCTTTGACTCTTTTGAGCAG 217 Query 69 TTTGTTGATAGTGAAAGGAGAAAGCCCTTACAAGTTTTACACCTGGACTGTAACTTATGG 128 |||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 218 TTTGGTGATAGTGAAAGGAGAAAGCCCTTACAAGTTTTACACTTGGACTGTGACTTATGG 277 Query 129 CATTATCTCTCCTCTTGGTGTTCCTCAACAGGTTATTCTCATCAATGGTCAGTTTCCTGG 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 278 CATTATCTCTCCTCTTGGTGTTCCTCAACAGGTTATTCTCATCAATGGTCAGTTTCCTGG 337 Query 189 TCCAAAGCTTGATGTTGTGACCAATGACAACATCATCCTCAACCTCATCAACAAACTTGA 248 |||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 338 TCCAAAACTTGAAGTTGTGACCAACGACAACATCATCCTCAACCTCATCAACAAACTTGA 397 Query 249 CCAGCCTTTCCTCTTGACCTGGAATGGGATTAAGCAGAGGAAGAACTCATGGCAAGATGG 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 398 CCAGCCTTTCCTCTTGACCTGGAATGGGATTAAGCAGAGGAAGAACTCATGGCAAGATGG 457 Query 309 TGTTTTGGGAACAAACTGTCCGATCCAACCGAACTCAAACTTCACTTACAAATTCCAAAC 368 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 458 TGTTTTGGGAACAAACTGTCCGATCCAACCAAACTCAAACTTCACTTACAAATTCCAAAC 517 Query 369 CAAAGATCAGATTGGAACTTTCCATTACTTCCCTTCCACCGCTTTTCACAAAGCCGCCGG 428 |||||||||||| ||||||||| | |||||||||||||| |||||||||||||||||||| Sbjct 518 CAAAGATCAGATCGGAACTTTCAACTACTTCCCTTCCACTGCTTTTCACAAAGCCGCCGG 577 Query 429 TGGATTCGGAGCCATCAATGTCTATGCAAGACCTGGAATCCCAATCCCTTACCCTCTCCC 488 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 578 TGGATTCGGAGCCATCAATGTCTACGCAAGACCTGGAATTCCAATCCCTTACCCTCTCCC 637 Query 489 AACCGCAGATTTCACTTTACTCGTTGGTGATTGGTTCAAAACCAACCACAAAACGCTTCA 548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 638 AACCGCAGATTTCACTTTACTCGTTGGTGATTGGTTCAAAACCAACCACAAAACGCTTCA 697 Query 549 ACAGCGTTTGGATTCTGGTGGGGTTCTTCCATTTCCCGATGGGATGCTCATAAATGGACA 608 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 698 ACAGCGTTTGGATTCTGGTGGGGTTCTTCCATTTCCCGATGGGATGCTTATAAATGGACA 757 Query 609 AACTCAAACAACATTTTCAGGCGACCAAGGGAAGACTTATATGTTCAGAATCTCTAATGT 668 ||| ||| |||| |||||||||||||||||||||||||| ||||| |||||||| ||||| Sbjct 758 AACCCAATCAACGTTTTCAGGCGACCAAGGGAAGACTTACATGTTGAGAATCTCCAATGT 817 Query 669 TGGGTTATCAAGCAGTTTCAATTTCAGAATCCAAGGACATACAATGAAAGTAGTTGAAGT 728 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 818 TGGGTTATCAAGCACTTTCAATTTCAGAATCCAAGGCCATACAATGAAAGTAGTTGAAGT 877 Query 729 TGAAGGCTCTCATGTTATTCAAACTGATTATGATTCTCTTGACATTCATGTTGGCCAGTC 788 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 878 TGAAGGCTCTCATGTTATTCAAACTGATTATGATTCTCTTGACATTCACGTTGGCCAGTC 937 Query 789 TTTAGCTGTTCTTGTTACTTTAAACCAATCTCCCAGAGATTATTACATCGTCGCAAGCAC 848 |||||| |||||||||||||||||||||||||| | ||||||||||||||| |||||||| Sbjct 938 TTTAGCAGTTCTTGTTACTTTAAACCAATCTCCTAAAGATTATTACATCGTTGCAAGCAC 997 Query 849 CCGGTTCGTTAGAAGCAAAG-TTTCTGTTATGGGTTTGTTGCGTTATTCTAACTCCCGCG 907 ||||||| | |||||||| | |||||||||||||||||||||||||||||||||| |||| Sbjct 998 CCGGTTCATAAGAAGCAA-GCTTTCTGTTATGGGTTTGTTGCGTTATTCTAACTCTCGCG 1056 Query 908 TCTCAGCTTCTGGTGATCAGCCTGCTCTTCCACCTGGAGAGCTTGTTTGGTCCATGAGAC 967 || ||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1057 TCCCAGCTTCTGGTGATCCTCCCGCTCTTCCACCTGGAGAGCTTGTTTGGTCCATGAGAC 1116 Query 968 AAGCTAGAACATTCAGGTGGAACTTAACAGCAAATGCAGCTAGACCAAACCCTCAAGGAT 1027 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1117 AAGCTAGAACCTTCAGATGGAACTTAACAGCAAATGCAGCTAGACCAAACCCTCAAGGAT 1176 Query 1028 CATTCCACTATGGAATGATCACTCCAACAAAGTCATTTGTCTTCTCAAATTCAGCTCCTT 1087 | ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 1177 CTTTCCACTATGGAATGATCAGTCCAACAAAGACATTTGTCTTCTCAAATTCAGCTCCTT 1236 Query 1088 TAATTAATGGAAAGCAAAGATATGCAGTCAATGGAGTCTCTTATGTGAACTCAGTGACGC 1147 | |||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 1237 TGATTAATGGGAAGCAAAGATATGCAGTCAATGGAGTCTCTTATGTGAAATCAGAGACGC 1296 Query 1148 CTCTTAAACTCGCTGATCACTTTGGAATCAGTGGAGTTTTCAGCACCAACGCCATTCAAA 1207 ||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||| Sbjct 1297 CTCTTAAACTCGCTGATCACTTTGGCATCTCAGGAGTTTTCAGCACCAATGCCATTCAAA 1356 Query 1208 GCGTCCCTTCTAACTCTCCTCCAACTGTTGCAACATCAGTTGTTCAAACATCTCTCCATG 1267 ||||||| || |||||||| ||||| |||||||||||||||||||||||||||| ||||| Sbjct 1357 GCGTCCCATCAAACTCTCCGCCAACAGTTGCAACATCAGTTGTTCAAACATCTCACCATG 1416 Query 1268 ATTTCCTTGAAATTGTGTTTCAGAACAATGAGAAGTCAATGCAGTCTTGGCATCTTGACG 1327 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 1417 ACTTCCTTGAAATTGTATTTCAGAACAATGAGAAGTCAATGCAGTCTTGGCATCTTGATG 1476 Query 1328 GATATGACTTCTGGGTCGTTGGATTTGGTTCTGGACAATGGACACCTGCAAAAAGATCAC 1387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1477 GATATGACTTCTGGGTCGTTGGATTTGGTTCTGGACAATGGACACCTGCAAAAAGATCAC 1536 Query 1388 T-CTACAATCTTGTTGATGCTCTTACCAGACACACTACTCAGGTGTACCCAGAGTCTTGG 1446 | | ||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct 1537 TTC-ACAATCTTGTTGATGCTCTGACCAGACACACAACTCAGGTCTACCCAGAGTCTTGG 1595 Query 1447 ACAACAATCTTGGTGTCTTTGGACAATCAAGGGATGTGGAATATGAGATCAGCGATATGG 1506 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1596 ACAACAATCTTAGTGTCTTTAGACAATCAAGGGATGTGGAATATGAGATCAGCGATATGG 1655 Query 1507 GAAAGACAATATTCAGGACAACAGTTTTATCTCAAAGTATGGAATCCAGTGCAGAGCCTT 1566 ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| Sbjct 1656 GAAAGACAATATTCAGGACAACAGTTTTATCTCAAAGTATGGAATTCAGTACAGAGTCTT 1715 Query 1567 GCCAATGAATACAATCCTCCTGACAATCTTCAATTCTGTGGCAAAGCTGTTGGAAGACAC 1626 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 1716 GCCAATGAATACAATCCTCCTGACAATCTTCAACTCTGTGGCAAAGCTGTTGGACGACAT 1775 Query 1627 CTTTAG 1632 ||||| Sbjct 1776 GTTTAG 1781 > AT2G23630.1 | Symbols: sks16 | SKU5 similar 16 | chr2:10052566-10055317 REVERSE LENGTH=1647 Length=1647 Score = 172 bits (93), Expect = 7e-42 Identities = 188/234 (80%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 108 CACCTGGACTGTAACTTATGGCATTATCTCTCCTCTT-GGTGTTCCTCAACAGGTTATTC 166 ||| |||||||| |||||||| | | || ||| || |||||||||||||||||||||| Sbjct 102 CACTTGGACTGTTACTTATGGAACCAGATCGCCT-TTAGGTGTTCCTCAACAGGTTATTC 160 Query 167 TCATCAATGGTCAGTTTCCTGGT-C-CAAAGCTTGATGTTGTGACCAATGACAACATCAT 224 | || ||||| ||||| |||||| | | || |||| | ||| || || | || ||| | Sbjct 161 TTATTAATGGCCAGTTCCCTGGTCCTCCAA--TTGAAGGTGTAACAAACAATAATATCGT 218 Query 225 CCTCAACCTCATCAACAAACTTGACCAGCCTTTCCTCTTGACCTGGAATGGGATTAAGCA 284 | || |||| ||||| |||||| | ||||||||| | |||||||| || ||||| || Sbjct 219 TGTTAATGTCATTAACAAGCTTGACGAACCTTTCCTCATCACCTGGAACGGAATTAAACA 278 Query 285 GAGGAAGAACTCATGGCAAGATGGTGTTTTGGGAACAAACTGTCCGATCCAACC 338 |||||||| || |||||||| |||||||||||||||||||||||||||||||| Sbjct 279 GAGGAAGATGTCGTGGCAAGACGGTGTTTTGGGAACAAACTGTCCGATCCAACC 332 > AT5G48450.1 | Symbols: sks3 | SKU5 similar 3 | chr5:19632791-19635664 REVERSE LENGTH=1918 Length=1918 Score = 76.8 bits (41), Expect = 6e-13 Identities = 73/88 (83%), Gaps = 4/88 (5%) Strand=Plus/Plus Query 244 CTTGACCAGCC-TTTCCTCTTGACCTGGAATGGGAT-TAAGCAGAGGAAGAACTCATGGC 301 ||||| |||| || | |||| || |||||||| || || || ||||| |||||||||| Sbjct 281 CTTGATGAGCCATTGCTTCTT-ACATGGAATGGAATCCAA-CATAGGAAAAACTCATGGC 338 Query 302 AAGATGGTGTTTTGGGAACAAACTGTCC 329 ||||||||||||||||||| || ||||| Sbjct 339 AAGATGGTGTTTTGGGAACTAATTGTCC 366 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80622075270 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5