BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg918566 Length=1767 Score E Sequences producing significant alignments: (Bits) Value AT5G66130.1 | Symbols: ATRAD17, RAD17 | RADIATION SENSITIVE 17 ... 2671 0.0 > AT5G66130.1 | Symbols: ATRAD17, RAD17 | RADIATION SENSITIVE 17 | chr5:26434064-26437222 FORWARD LENGTH=2103 Length=2103 Score = 2671 bits (1446), Expect = 0.0 Identities = 1654/1752 (94%), Gaps = 23/1752 (1%) Strand=Plus/Plus Query 38 ATAACTTAAGGTCATCGCGTTCTAATGCCAAGTCCAAACCCAGGTCCTCTGCTGCTACCA 97 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 222 ATAACTTAAGGTCATCGCGTTCTAATGCCAAGTCGAAACCCAGGTCCTCTGCTGGTACCG 281 Query 98 CAACCAATCCTAGAGCGTCAAAGAGAGCTCGACTTTC-----C----G-G--T------G 139 |||| |||||||||||||||||||||||||| ||||| | | | | | Sbjct 282 CAACGAATCCTAGAGCGTCAAAGAGAGCTCGCCTTTCGGGTGCTAGTGCGACTCAAGAAG 341 Query 140 ---CGAGTCTTGTAGATAAGATTAGATTGTCTTTCGAAGATTTTGATGAAGCTTTAAGCG 196 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 342 ACTCGAGTCTTGTAGATAAGATTAGATTGTCTTTCGAAGATTTCGATGAAGCTTTAAGCG 401 Query 197 GCTTCAAGGTCTCTTCTGGTTATGAAAGGAGCAAGAATACCGATTTATGGGTTGATAAAT 256 |||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 402 GCTTCAAGGTATCTTCTGGTTATGAAAGGAGCAAGAATACCGATTTGTGGGTTGACAAAT 461 Query 257 ACAGGCCTCGCACCTTGGAAGAGCTTGCTGTTCACAAGAAGAAGGTTGAAGAAGTCAAAT 316 |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 462 ACAGGCCTCGCACCTTGGAAGAGCTTTCTGTTCACAAGAAGAAGGTTGACGAAGTCAAAT 521 Query 317 TGTGG-TTCGAGGAAAGTTTGGATTTCTCAAAGGATGGTTTAAGGAATAATGTTCTACTA 375 ||||| ||| |||||||||||||||||| |||| |||||||||||||||| ||||||||| Sbjct 522 TGTGGTTTC-AGGAAAGTTTGGATTTCTTAAAGAATGGTTTAAGGAATAACGTTCTACTA 580 Query 376 GTCACAGGACAAGCTGGAGTCGGAAAATCTGCTACCATCCATTTGATTGCCTCTATCCTT 435 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 581 GTCACAGGACAAGCTGGAGTCGGAAAATCTGCTACCATCCATTTGATTACGTCTATCCTT 640 Query 436 GGAGTCACAGTGTATGAGTGGAACGCTCCTATTCCTACTATCTGGCAAGAACATGTGCAC 495 |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 641 GGAGTCACAGTGCATGAGTGGAACGCTCCTATTCCTACCATCTGGCAAGAACATGTGCAC 700 Query 496 AACTCTAGTTCAGGACTGAAGTACACGTCGAAGCTGGATGAGTTTGAAAACTTTGTCGAG 555 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 701 AACACTAGTTCAGGACTGAAGTACACGTCGAAGCTGGATGAGTTTGAAAACTTTGTTGAG 760 Query 556 AGTACTAGGAAATACGGAGTGATGGCTTCATCAAGTACTGAGGGAATAAAGGCGCCCGTT 615 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 761 AGTACTAGGAAATACGGAGTAATGGCTTCATCAAGTACTGACGGAATAAAGGCGCCCGTT 820 Query 616 GTTCTTTTGATTGATGACCTTCCTCTAGCCAATGGGAGGCATGCTTGTGAAAGGCTGCAA 675 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 821 GTTCTTTTGATTGATGACCTTCCTCTAGCCAATGGGAGGCATGCTTTTGAAAGGCTGCAA 880 Query 676 AACTGCTTACTTCTATTGGTGAGATCAACGCAGATTCCAACAGTGATATTAATCACTGAC 735 || ||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 881 AATTGCCTACTACTATTGGTGAAATCAACGCAGATTCCAACAGTGATATTAATCACTGAC 940 Query 736 TACGATAAAGCGGACTCTTCTGACCAGACTGCGCGAAGCATGGAGGACGCACAGTCATCT 795 || |||| ||||||||||||||||||||||| ||| ||||||||||| ||||||||||| Sbjct 941 CACAATAACGCGGACTCTTCTGACCAGACTGCACGACGCATGGAGGACACACAGTCATCT 1000 Query 796 CTTGAGCGAGCAGGAGCTTTAAAGGTCGCTTTCAATCCCATCACGAAGAACTCAATTAAA 855 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1001 CTTGAGCGAGCAGGGGCTTTAAAGGTTGCTTTCAATCCCATCACGAAGAACTCAATTAAA 1060 Query 856 AAGGCACTTCAGAGAATATGTAGGGAAGAGCATTGTAAGGTAACGACTATGGAGATTGAT 915 |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1061 AAGGTACTTCAGAGAATATGTAGGGAAGAGCATTGTAAGGTAACAACTATGGAGATTGAT 1120 Query 916 CAGATGGCGAGTGCCAGTGGAGGAGACATCAGACATGCTATTACCTCTTTGCAACTCTTC 975 |||||||| | ||| |||||||| |||||||||||||||||||| |||||||| |||||| Sbjct 1121 CAGATGGCAACTGCAAGTGGAGGCGACATCAGACATGCTATTACATCTTTGCAGCTCTTC 1180 Query 976 TCCGTTAAGCCAGACCTAAATCATACTAAGATAAAATCACCACGGCCTGGCATGGATGAC 1035 |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 1181 TCCGTTAAGCCAGAGCTAAATCATACTAAGATAAAATCACCAAGGCCTGGCATGGAAGAC 1240 Query 1036 AGTTATCATGGAAACGAGCAGACAATGTACAATGGTTTGGATAGTGGAATATCTTCCTGT 1095 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1241 AATTATCATGGAAACGAGCAGACAATGTACAGTGGTTTGGATAGTGGAATATCTTCCTGT 1300 Query 1096 TTTGGTAGAGATGAGACCCTTTCGTTGTTTCACGCTCTGGGCAAGTTTCTCCACAACAAA 1155 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1301 TTTGGTAGAGATGAGACCCTTTCGTTGTTTCACGCTCTGGGCAAGTTTCTCCACAACAAA 1360 Query 1156 AGAGAGACTGATAATGTCATTGTATCAGATTGCAGCAACTCTCTTGTTCATGACGAATTT 1215 |||||||| |||||||||||| ||||||| ||||||| |||||||||||||||||| ||| Sbjct 1361 AGAGAGACGGATAATGTCATTATATCAGAGTGCAGCAGCTCTCTTGTTCATGACGAGTTT 1420 Query 1216 GCGAGGTTGCCACTGAAAATGGATGCGCCGGAGAAGGTTCTCAGCCAAGCTCATGGACAG 1275 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1421 GCAAGGTTGCCACTGAAAATGGATGCGCCGGAGAAGGTTCTCAGCCAAGCTCATGGACAG 1480 Query 1276 GCAGGGCGGGTTGTGGATTTTCTGCATGAAAATGTGCTAGATTTTGTGAGTGAGGGAGCC 1335 || |||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| Sbjct 1481 GCGGGGCGGGTTGTGGATTTTCTACATGAAAATGTGTTAGATTTTGTGAGTGACGGAGCC 1540 Query 1336 ATAGAAGATGCCTGGTGTGTTTCTTCGTATTTGGCGGATGCTGATCTCCTTCTCGCTGAT 1395 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1541 ATAGAAGATGCCTGGTGTGTTTCTTCGTATTTGGCGGATGCTGATCTCCTTCTCGCTGAT 1600 Query 1396 TTAAGAGGAAAGATGAGTGGGCATAATAAAACAGAGGATGTTTCACAGTCAGCCGGTGCC 1455 ||||||||||||||||||| ||||| || |||||||||||| ||||||||||||||||| Sbjct 1601 ATAAGAGGAAAGATGAGTGGACATAACAACACAGAGGATGTTCCACAGTCAGCCGGTGCC 1660 Query 1456 TCGGTTGCTGTCCGTGGTGTGTTGTATGGAAACAAGCAGCCATGTTCATCCAGATGGCAC 1515 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1661 TCGGTTGCTGTTCGTGGTGTGTTGTATGGAAACAAGCAGCCATGTTCATCCAGATGGCAC 1720 Query 1516 GTGATTCGAAAGCCAAAACTCTGGCAAGTGGAGCAATCCTCAATACAAACAAAGAAGAAT 1575 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1721 GTGATTCGGAAGCCAAAACTCTGGCAAGTGGAGCAATCCTCAATACAAACAAAGAAGAAT 1780 Query 1576 CTGAGAGAGCAGAGGAACATAAGCTATGAGGGGTCAAGGGTGGCAGATATATCAGTGATG 1635 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1781 CTGAGAGAGCAGAGGAACATAAGCTATGAGGGGTCAAGAGTGGCAGATATATCAGTGATG 1840 Query 1636 GCCACAGAGTATAGCCCCGTGCTGAAATGGCTTAGTTACAGGGCATCTCCAGATGCGTTT 1695 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1841 GCCACAGAGTATAGCCCCGTGCTGAAATGGCTTAGCTACAGGGCATCTCCAGATGCGTTT 1900 Query 1696 GCAGGAATGGGTGAAGAGACGGATGAGGAGGAGAGTGAAATTTCTGAAGACGATGAAATA 1755 | |||||||| |||||||| ||||||||||| ||||| ||||||||||| ||||||||| Sbjct 1901 CCGGGAATGGGCGAAGAGACAGATGAGGAGGACAGTGATATTTCTGAAGATGATGAAATA 1960 Query 1756 CAAGATTGGTGA 1767 ||||| |||||| Sbjct 1961 CAAGACTGGTGA 1972 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87399148845 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5