BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg918672

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G02280.1 | Symbols:  | Flavodoxin family protein | chr3:4534...   682    0.0  


> AT3G02280.1 | Symbols:  | Flavodoxin family protein | chr3:453421-457841 
FORWARD LENGTH=2201
Length=2201

 Score =  682 bits (369),  Expect = 0.0
 Identities = 407/425 (96%), Gaps = 3/425 (1%)
 Strand=Plus/Plus

Query  1    ATGGGAGAAAAGCCGAGGAAGCTGCTTGTGATGTATGCTTCTCAGACCGGGAACGCTCTT  60
            ||||||||||| |  ||||||||||||||| ||||||| ||||||||||| |||||||||
Sbjct  148  ATGGGAGAAAAACAAAGGAAGCTGCTTGTGTTGTATGCCTCTCAGACCGGAAACGCTCTT  207

Query  61   GATGCGGCGGAGCGTATTGGCCGCGAAGCAGAACGCCGTGGATTTCCAGCATCTATCGTC  120
            |||||||||||||||||||||||||||||||||||||||||| | ||||| ||| |||||
Sbjct  208  GATGCGGCGGAGCGTATTGGCCGCGAAGCAGAACGCCGTGGACTGCCAGCTTCTGTCGTC  267

Query  121  TCCACCGACGAATTCGACGCGAGTTCCTTA-C-C-TCATGAGGAGGCTGTTGTTTTTGTT  177
            |||||||||||||||||| ||||||||||| | | |||||||||||||||||||||||||
Sbjct  268  TCCACCGACGAATTCGACACGAGTTCCTTACCTCATCATGAGGAGGCTGTTGTTTTTGTT  327

Query  178  GTCTCCACTACAGGGCAAGGAGACTCTCCTGATTCCTTTAAGGCATTTTGGAGGTTTCTT  237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  328  GTCTCCACTACAGGGCAAGGAGACTCTCCTGATTCCTTTAAGGCATTTTGGAGGTTTCTT  387

Query  238  CTTCAAAGAAATCTGGGAAACTATTGGTTGCAACAAGTTCGCTATGCGGTGTTTGGATTA  297
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct  388  CTTCAAAGAAATCTGGGAAACTATTGGTTGCAACAAGTTCGCTATGCAGTGTTTGGACTA  447

Query  298  GGTGATTCTGGTTACCAGAAGTACAATTTTGTAGCAAAGAAGCTAGACAAAAGATTATCA  357
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  448  GGTGATTCTGGTTACCAGAAGTACAACTTTGTAGCAAAGAAGCTAGACAAAAGATTATCA  507

Query  358  GATCTGGGGGCCACAACCATCATTGAAAAAGGTCTAGGAGATGATCAACACCCATCAGGG  417
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  508  GATCTTGGGGCCACAACCATCATTGAAAAAGGTCTAGGAGATGATCAACACCCATCAGGG  567

Query  418  TATGA  422
            |||||
Sbjct  568  TATGA  572



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20660044839


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5