BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918726
Length=1615
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2695 0.0
> AT1G02150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:408622-410611 FORWARD LENGTH=1910
Length=1910
Score = 2695 bits (1459), Expect = 0.0
Identities = 1567/1619 (97%), Gaps = 8/1619 (0%)
Strand=Plus/Plus
Query 1 GAAACCTAACGAGTAACGAC--GAGATGCTTCTTCAGGCGGCGGTGCAGAACCGCAATGT 58
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 133 GAAACCTAACGAGTAACGACGAGAGATGCTTCTTCAGGCGGCGGTGCAGAACCGCAATGT 192
Query 59 TCCACTGGCTTCTTCCGCCTCCTACTCCCGTCTCCCTCGCTGCAGATCTCCTGTCGTCTC 118
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 193 TCCACTGGCTTCTTCCGCCTCCTACTCTCGTCTCCTTCGCTGCAGATCTCCTGTCGTCTC 252
Query 119 CGTA---GCTCTCGCGAAGAAGACGGCAGCAATCGTGTGCTCCATCTCCCAGGTCTATGG 175
|||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 253 CGTAGCTGCTCTCTCGAAGAAGACGGCAGCAATCGTGTGCTCCATCTCCCAGGTTTATGG 312
Query 176 CTACGGCACGGTTGACTACGAGAGAAGGCCGATTATCCAGTGGAATGCCATCTACAAGAA 235
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 313 CTACGGCACGGTGGACTACGAGAGAAGGCCGATTGTCCAGTGGAATGCCATCTACAAGAA 372
Query 236 GATTTCTCTCATGGAAAAGCCGGAGCTTGGCGCTGCTTCCGTCTTGAATCAGTGGGAGAA 295
|||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 373 GATTTCGCTGATGGAGAAGCCAGAGCTTGGCGCTGCTTCCGTCTTGAATCAGTGGGAGAA 432
Query 296 AGGCGGCCGCAAGCTTACCAAGTGGGAGCTCTGTCGGGTCGTCAAGGAGCTTCGCAAGTA 355
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 AGCCGGCCGCAAGCTTACCAAGTGGGAGCTCTGTCGGGTCGTCAAGGAGCTTCGCAAGTA 492
Query 356 CAAGCGTCCCAACCAAGCTCTCGAGGTGTACGACTGGATGAACAACAGAGGCGAAAGGTT 415
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 CAAGCGTGCCAACCAAGCTCTCGAGGTGTACGACTGGATGAACAACAGAGGCGAAAGGTT 552
Query 416 TCGATTGTCTGCAAGTGATGCTGCAATCCAGCTCGACTTAATCGGCAAAGTGCGTGGCAT 475
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 TCGGTTGTCTGCAAGTGATGCTGCAATCCAGCTCGACTTAATCGGCAAAGTGCGTGGCAT 612
Query 476 TTCAGACGCCGAAGAGTTCTTCCT-CACGCTCCCTGAGAATTTTAAGGACCGGAGAGTTT 534
| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 613 TCCAGACGCCGAAGAGTTCTTCCTCCA-GCTCCCTGAGAATTTTAAGGACCGGAGAGTTT 671
Query 535 ATGGTTCCCTCCTCAATGCCTATGTGAGGGCCAAGTCGAGAGAAAAGGCTGAAGTCCTGC 594
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 672 ATGGTTCCCTCCTCAATGCCTATGTGAGGGCCAAGTCGAGAGAAAAGGCTGAAGCCCTGC 731
Query 595 TCAACACCATGAGGGACAAAGGATACGCCCTGCACCCGCTTCCCTTCAACGTCATGATGA 654
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 732 TCAACACCATGAGGGACAAAGGTTACGCCCTGCACCCGCTTCCCTTCAACGTCATGATGA 791
Query 655 CTCTCTACATGAACCTTAGGGAGTATGACAAAGTCGACGCAATGGTCTTCGAGATGAAGC 714
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 792 CTCTCTACATGAACCTCAGGGAGTATGACAAAGTCGACGCTATGGTCTTCGAGATGAAGC 851
Query 715 AAAAAGATATACGTCTCGACATTTACTCCTACAACATCTGGCTCTCCTCATGCGGCTCCT 774
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 852 AGAAAGATATACGTCTCGACATTTACTCCTACAACATCTGGCTCTCCTCTTGCGGCTCCT 911
Query 775 TAGGATCAGTTGAGAAAATGGAACTAGTGTATCAGCAGATGAAATCGGATGTTTCCATTA 834
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 TAGGATCAGTTGAGAAAATGGAACTAGTGTATCAGCAGATGAAATCGGATGTTTCCATTT 971
Query 835 ATCCCAACTGGACCACCTTTAGCACAATGGCCACCATGTACATAAAGATGGGTGAAACTG 894
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 972 ATCCCAACTGGACCACGTTTAGCACAATGGCCACAATGTACATAAAGATGGGTGAAACTG 1031
Query 895 AGAAAGCCGAAGCTGCACTGAGGAAGGTTGAAGCCAGGATTACTGGTCGTAATCGCATTC 954
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1032 AGAAAGCCGAAGATGCACTGAGGAAGGTTGAAGCAAGGATTACTGGTCGTAATCGCATTC 1091
Query 955 CATATCACTACCTCTTGAGTTTGTATGGCAGCGTTGGTAACAAGAAAGAGCTGTACAGAG 1014
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1092 CGTATCACTACCTCTTGAGTTTGTATGGCAGCCTTGGTAACAAGAAAGAGCTGTACCGAG 1151
Query 1015 TCTGGAACGTCTACAAATCTGTTGTCCCGAGCATTCCCAATTTGGGTTACCATGCCTTGG 1074
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 TCTGGCACGTCTACAAATCTGTTGTCCCGAGCATTCCCAATTTGGGTTACCATGCCTTGG 1211
Query 1075 TCTCGTCGCTGGTGAGGATGGGAGACATTGAAGGGGCCGAGAAGGTATATGAGGAATGGC 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 TCTCGTCGCTGGTGAGGATGGGAGACATTGAAGGGGCCGAGAAGGTATATGAGGAATGGC 1271
Query 1135 TTCCAGTCAAGTCTTCTTATGACCCCAGGATACCAAATCTTCTGATGAATGTGTATGTCA 1194
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1272 TTCCAGTCAAGTCTTCTTATGACCCCAGGATACCAAATCTTCTGATGAATGCGTATGTCA 1331
Query 1195 AAAACGACCAACTAGAGAAAGCTGAGGGGTTGTTCGACCACATGGTTGAAATGGGAGGAA 1254
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 AAAACGACCAACTAGAGACAGCTGAGGGGTTGTTCGACCACATGGTTGAAATGGGAGGAA 1391
Query 1255 AACCAAGTTCAAGTACGTGGGAGATTCTAGCTGATGGTCATACCAGAAAGAGGTGTATTC 1314
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1392 AACCAAGTTCAAGTACGTGGGAGATTCTAGCTGTTGGTCATACCAGAAAGAGGTGTATTT 1451
Query 1315 CAGAGGCTTTGACTTGTCTGAGAAAAGCTTTTTCGGCTGAAGGGTCCAGCAATTGGAGGC 1374
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1452 CAGAGGCTTTGACTTGTCTTAGAAATGCTTTTTCGGCTGAAGGGTCCAGCAATTGGAGGC 1511
Query 1375 CCAAGGTGTTGATGCTGTCCGGTTTCTTCAAGCTCTGTGAAGAGGAATCGGATGTTACCA 1434
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1512 CCAAGGTGTTGATGCTGTCTGGTTTCTTCAAGCTCTGTGAAGAGGAATCGGATGTTACCA 1571
Query 1435 GTAAAGAGGCCGTTTTGGAATTGTTGAGGCAGTCGGGGCATCTTGAAGACAAAGCTTACC 1494
||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||
Sbjct 1572 GTAAAGAGGCCGTTTTGGAATTGTTAAGGCAGTCGGGGGATCTTGAAGACAAATCTTACC 1631
Query 1495 AAGCACTTATTGATGTGGACGAAAACAGAACAGTAAACAACAGTGAAATCGATGCCCATG 1554
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 TAGCTCTTATTGATGTGGACGAAAACAGAACAGTAAACAACAGTGAAATCGATGCCCATG 1691
Query 1555 AGACCGATGCACTTCTAACACAGCTACAAGATGATTTGTAATCA-AGAGTCCTAGATCT 1612
|||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1692 AGACCGATGCGCTTCTAACACAGCTACAAGATGATTTGTAATCTGATAGTCCTAGATCT 1750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79768666005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5