BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918785
Length=938
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01720.1 | Symbols: ATAF1, ANAC002 | NAC (No Apical Meristem... 1321 0.0
AT3G04070.1 | Symbols: anac047, NAC047 | NAC domain containing ... 63.9 3e-09
> AT1G01720.1 | Symbols: ATAF1, ANAC002 | NAC (No Apical Meristem)
domain transcriptional regulator superfamily protein | chr1:268330-269819
FORWARD LENGTH=1316
Length=1316
Score = 1321 bits (715), Expect = 0.0
Identities = 840/895 (94%), Gaps = 30/895 (3%)
Strand=Plus/Plus
Query 30 TATGTCAGAATTATTACAGTTGCCTCCAGGATTCCGATTCCACCCTACCGATGAAGAGCT 89
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 141 TATGTCAGAATTATTACAGTTGCCTCCAGGTTTCCGATTTCACCCTACCGATGAAGAGCT 200
Query 90 TGTCATGCACTATCTCTGCCGCAAATGTACTTCTCAGTCCATCGCTGTTCCTATCATCGC 149
|||||||||||||||||||||||||||| | |||||||||||||| ||||| ||||||||
Sbjct 201 TGTCATGCACTATCTCTGCCGCAAATGTGCCTCTCAGTCCATCGCCGTTCCGATCATCGC 260
Query 150 TGAGATCGATCTCTACAAGTACGATCCATGGGAGCTTCCTGGTTTAGCCTTGTATGGTGA 209
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 261 TGAGATCGATCTCTACAAATACGATCCATGGGAGCTTCCTGGTTTAGCCTTGTATGGTGA 320
Query 210 GAAGGAATGGTACTTCTTCTCTCCCAGGGACAGAAAATATCCCAACGGTTCGCGTCCTAA 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 GAAGGAATGGTACTTCTTCTCTCCCAGGGACAGAAAATATCCCAACGGTTCGCGTCCTAA 380
Query 270 CCGGTCTGCTGGTTCTGGTTACTGGAAAGCTACCGGAGCTGATAAACCGATCGGACTTCC 329
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 381 CCGGTCCGCTGGTTCTGGTTACTGGAAAGCTACCGGAGCTGATAAACCGATCGGACTACC 440
Query 330 TAAACCGGTCGGAATTAAGAAAGCTCTTGTTTTCTACGCCGGAAAAGCCCCAAAAGGAGA 389
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 441 TAAACCGGTCGGAATTAAGAAAGCTCTTGTTTTCTACGCCGGCAAAGCTCCAAAGGGAGA 500
Query 390 GAAAACCAATTGGATCATGCACGAGTACCGTCTCGCCGACGTTGACCGGTCGGTTCGCAA 449
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 501 GAAAACCAATTGGATCATGCACGAGTACCGTCTCGCCGACGTTGACCGGTCCGTTCGCAA 560
Query 450 GAAGAAGAATAGTCTCAGGCTGGATGATTGGGTTCTTTGCCGGATTTACAACAAAAAAGG 509
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 561 GAAGAAGAATAGTCTCAGGCTGGATGATTGGGTTCTCTGCCGGATTTACAACAAAAAAGG 620
Query 510 AGCTACCGAGAGGCGTGGACCACCTCCTCCGGCTGTTTACGGCGACGAAATCATGGAGGA 569
||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 621 AGCTACCGAGAGGCGGGGACCACCGCCTCCGGTTGTTTACGGCGACGAAATCATGGAGGA 680
Query 570 GAAGCCGAAGGTGACGGAGATGGTTATGCCTCCGCCGCAGCAACAggcggcggcgacggc 629
|||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 681 GAAGCCGAAGGTGACGGAGATGGTTATGCCTCCGCCGCCGCAACAG---------AC--- 728
Query 630 gacggcgacggcgagcgaGTTCGTGTATTTCGACACGTCGGATTCGGTGCCGAAGCTGCA 689
| | | ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 729 -A-----A-GT-GAG----TTCGCGTATTTCGACACGTCGGATTCGGTGCCGAAGCTGCA 776
Query 690 TACGACGGATTCGAGCTGCTCGGAGCAGGTGGTGTCGCCGGAGTTCACGAGCGAGGTTCA 749
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TACTACGGATTCGAGTTGCTCGGAGCAGGTGGTGTCGCCGGAGTTCACGAGCGAGGTTCA 836
Query 750 GAGCGAGCCCAAGTGGAAGGATTGGTCGGCTGTAAGTAATGCCAATAACA---CCCTTGA 806
|||||||||||||||||| ||||||||||| |||||||||| |||||||| |||||||
Sbjct 837 GAGCGAGCCCAAGTGGAAAGATTGGTCGGCCGTAAGTAATGACAATAACAATACCCTTGA 896
Query 807 TTTTGGGTTTAATTACATTGATGCCACCGTGGATAACGCGTTTGGAGGAGG-G--AGTAG 863
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 897 TTTTGGGTTTAATTACATTGATGCCACCGTGGATAACGCGTTTGGAGGAGGAGGGAGTAG 956
Query 864 TAATCAGATGTTTCCGCTACAGGATATGTTCATGTACATGCAGAAGCCTTACTAg 918
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TAATCAGATGTTTCCGCTACAGGATATGTTCATGTACATGCAGAAGCCTTACTAG 1011
> AT3G04070.1 | Symbols: anac047, NAC047 | NAC domain containing
protein 47 | chr3:1061526-1063103 REVERSE LENGTH=1254
Length=1254
Score = 63.9 bits (34), Expect = 3e-09
Identities = 47/53 (89%), Gaps = 2/53 (4%)
Strand=Plus/Plus
Query 454 AAGAATAGTC--TCAGGCTGGATGATTGGGTTCTTTGCCGGATTTACAACAAA 504
||||||| || | || |||||||||||||||||||||||||||||||| |||
Sbjct 633 AAGAATATTCGATGAGACTGGATGATTGGGTTCTTTGCCGGATTTACAAGAAA 685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45863776211
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5