BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918858
Length=1628
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01120.1 | Symbols: KCS1 | 3-ketoacyl-CoA synthase 1 | chr1:... 2710 0.0
AT5G43760.1 | Symbols: KCS20 | 3-ketoacyl-CoA synthase 20 | chr... 311 2e-83
AT2G46720.1 | Symbols: HIC, KCS13 | 3-ketoacyl-CoA synthase 13 ... 132 1e-29
AT3G10280.1 | Symbols: KCS14 | 3-ketoacyl-CoA synthase 14 | chr... 58.4 2e-07
> AT1G01120.1 | Symbols: KCS1 | 3-ketoacyl-CoA synthase 1 | chr1:57269-59167
REVERSE LENGTH=1899
Length=1899
Score = 2710 bits (1467), Expect = 0.0
Identities = 1574/1627 (97%), Gaps = 2/1627 (0%)
Strand=Plus/Plus
Query 1 TTTCGACCCAAAACTATACTGATGGAGAGAACAAACAGCATTGAGATGGATCGAGAGAGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 TTTCGACCCAAAACTATACTGATGGAGAGAACAAACAGCATTGAGATGGATCGAGAGAGA 228
Query 61 TTAACGGCGGAGATGGCGTTTCGAGATTCATCATCGGCCGTCATAAGAATCCGGAGACGT 120
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 229 TTAACGGCGGAGATGGCGTTTCGAGATTCATCATCGGCCGTTATAAGAATTCGAAGACGT 288
Query 121 TTGCCGGATTTGTTAACGTCCGTTAAGCTCAAATACGTGAAGCTTGGTCTTCACAACTCT 180
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 289 TTGCCGGATTTATTAACGTCCGTTAAGCTCAAATACGTGAAGCTTGGACTTCACAACTCT 348
Query 181 TGCAACCTCACCACCATTCTCTTCTTTC-TAATTATTCTTCCCTTAACCGGAACCGTGCT 239
|||||| | ||||||||||||||| ||| ||||||||||||| |||||||||||||||||
Sbjct 349 TGCAACGTGACCACCATTCTCTTC-TTCTTAATTATTCTTCCTTTAACCGGAACCGTGCT 407
Query 240 GGTTCAGCTAACCGGTCTAACGTTCGATACGTTCTCTGAGCTTTGGTCTAACCAGGCGGT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 GGTTCAGCTAACCGGTCTAACGTTCGATACGTTCTCTGAGCTTTGGTCTAACCAGGCGGT 467
Query 300 TCAACTCGACACGGCGACGAGACTCACCTGCTTGGTTTTCCTCTGCTTCGTTTTGACCCT 359
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 468 TCAACTCGACACGGCGACGAGACTTACCTGCTTGGTTTTCCTCTCCTTCGTTTTGACCCT 527
Query 360 CTACGTGGCCAACCGGACTAAACCGGTTTACCTAGTGGATTTCTCTTGCTACAAACCGGA 419
||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 528 CTACGTGGCTAACCGGTCTAAACCGGTTTACCTAGTGGATTTCTCCTGCTACAAACCGGA 587
Query 420 AGACGAGCGTAAAATATCGGTAGATTCGTTCTTGACGATGACGGAGGAAAATGGATCGTT 479
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 588 AGACGAGCGTAAAATATCAGTAGATTCGTTCTTGACGATGACTGAGGAAAATGGATCATT 647
Query 480 CACCGATGACACGGTTCAGTTCCAGCAAAGAATCTCGAACCGGGCCGGTTTAGGAGACGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 648 CACCGATGACACGGTTCAGTTCCAGCAAAGAATCTCGAACCGGGCCGGTTTGGGAGACGA 707
Query 540 GACTTATCTACCACGTGGCATCACCTCAAAACCCCCGAAGCTAAATATGTCAGAGGCACG 599
||| ||||| ||||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct 708 GACGTATCTGCCACGTGGCATAACTTCAACGCCCCCGAAGCTAAATATGTCAGAGGCACG 767
Query 600 TGCCGAAGCTGAAGCCGTTATGTTCGGAGCCTTAGATTCCCTCTTCGAGAAAACCGGAAT 659
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 768 TGCCGAAGCTGAAGCCGTTATGTTTGGAGCCTTAGATTCCCTCTTCGAGAAAACCGGAAT 827
Query 660 TAAACCGGCCGAAGTTGGAATCTTGATAGTAAACTGCAGCTTATTCAATCCGACGCCGTC 719
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TAAACCGGCCGAAGTCGGAATCTTGATAGTAAACTGCAGCTTATTCAATCCGACGCCGTC 887
Query 720 TCTATCAGCGATGATCGTGAACCATTACAAGATGAGAGAAGACATCAAAAGCTACAACCT 779
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 888 TCTATCAGCGATGATCGTGAACCATTACAAGATGAGAGAAGACATCAAAAGTTACAACCT 947
Query 780 CGGAGGAATGGGTTGCTCTGCCGGATTAATCTCAATCGATCTCGCAAACAACCTCCTCAA 839
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 948 CGGAGGAATGGGTTGCTCCGCCGGATTAATCTCAATCGATCTCGCTAACAATCTCCTCAA 1007
Query 840 AGCAAACCCTAATTCTTACGCTGTCGTGGTAAGCACGGAAAACATAACCCTAAACTGGTA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 AGCAAACCCTAATTCTTACGCTGTCGTGGTAAGCACGGAAAACATAACCCTAAACTGGTA 1067
Query 900 CTTCGGAAATGACCGATCAATGCTCCTCTGCAACTGCATCTTCCGAATGGGCGGAGCTGC 959
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 CTTCGGAAATGACCGGTCAATGCTCCTCTGCAACTGCATCTTCCGAATGGGCGGAGCTGC 1127
Query 960 GATTCTCCTTTCTAACCGCCGACAAGACCGGAAGAAGTCAAAGTACTCGCTGGTCAACGT 1019
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1128 GATTCTCCTCTCTAACCGCCGTCAAGACCGGAAGAAGTCAAAGTACTCGCTGGTCAACGT 1187
Query 1020 CGTTCGAACGCATAAAGGATCAGACGACAAGAACTACAATTGCGTGTACCAGAAGGAAGA 1079
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 CGTTCGAACACATAAAGGATCAGACGACAAGAACTACAATTGCGTGTACCAGAAGGAAGA 1247
Query 1080 CGAGAGAGGAACAATCGGTGTCTCTTTAGCTCGAGAGCTCATGTCTGTTGCCGGAGACGC 1139
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1248 CGAGAGAGGAACAATCGGTGTCTCTTTAGCTAGAGAGCTCATGTCTGTCGCCGGAGACGC 1307
Query 1140 TCTGAAAACAAACATCACGACTTTAGGACCGATGGTTCTCCCATTGTCGGAACAGTTGAT 1199
||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 1308 TCTGAAAACAAACATCACGACTTTAGGACCGATGGTTCTTCCATTGTCAGAGCAGTTGAT 1367
Query 1200 GTTCTTGATTTCATTGGTCAAAAGGAAGATGTTCAAGCTAAAAGTGAAACCGTATATTCC 1259
|||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1368 GTTCTTGATTTCCTTGGTCAAAAGGAAGATGTTCAAGTTAAAAGTTAAACCGTATATTCC 1427
Query 1260 GGATTTCAAGCTAGCTTTCGAGCATTTCTGTATTCACGCAGGAGGTAGAGCGGTTCTAGA 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 GGATTTCAAGCTAGCTTTCGAGCATTTCTGTATTCACGCAGGAGGTAGAGCGGTTCTAGA 1487
Query 1320 CGAAGTGCAGAAGAATCTTGATCTCAAAGATTGGCACATGGAACCTTCTAGAATGACTTT 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 CGAAGTGCAGAAGAATCTTGATCTCAAAGATTGGCACATGGAACCTTCTAGAATGACTTT 1547
Query 1380 GCACCGGTTTGGTAACACTTCGAGTAGCTCGCTTTGGTATGAGATGGCTTATACGGAAGC 1439
|||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1548 GCACAGATTTGGTAACACTTCGAGTAGCTCGCTTTGGTATGAGATGGCTTATACCGAAGC 1607
Query 1440 TAAGGGTCGGGTTAAAGCCGGTGATCGACTTTGGCAGATTGCGTTTGGATCGGGTTTCAA 1499
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1608 TAAGGGTCGGGTTAAAGCTGGTGACCGACTTTGGCAGATTGCGTTTGGATCGGGTTTCAA 1667
Query 1500 GTGTAATAGTGCGGTTTGGAAAGCGTTACGACCAGTTTCGACGGAGGAGATGACTGGTAA 1559
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1668 GTGTAATAGTGCGGTTTGGAAAGCGTTACGACCGGTTTCGACGGAGGAGATGACCGGTAA 1727
Query 1560 TGCGTGGGCTGGTTCGATTGATCAATATCCGGTTAAAGTTGTACAATGATTTGTTGAACC 1619
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1728 TGCTTGGGCTGGTTCGATTGATCAATATCCGGTTAAAGTTGTGCAATGATTGGTTGAACC 1787
Query 1620 GGATAAT 1626
|||||||
Sbjct 1788 GGATAAT 1794
> AT5G43760.1 | Symbols: KCS20 | 3-ketoacyl-CoA synthase 20 | chr5:17585763-17588597
FORWARD LENGTH=1841
Length=1841
Score = 311 bits (168), Expect = 2e-83
Identities = 710/959 (74%), Gaps = 87/959 (9%)
Strand=Plus/Plus
Query 616 GTTATGTTCGGAGCCT-TAGATTC-CCTCTTCGAGAAAACCGGAATTAAACCGGCCGA-A 672
||||||||||||| || | || | |||| ||||| ||||| | ||||| || |
Sbjct 702 GTTATGTTCGGAG-CTATTGACGCGGTTCTT-GAGAAGACCGGTGTGAAACCTAAAGATA 759
Query 673 GTTGGAAT-CTTGATAGTAAACTGCAGCTTATTCAATCCGACGCCGTCTCTATCAGCGAT 731
||||||| |||| | || || || ||||| || ||||| || ||||| || || || ||
Sbjct 760 -TTGGAATCCTTG-TGGTGAATTGTAGCTTGTTTAATCCAACACCGTCACTTTCTGCTAT 817
Query 732 GATCGTGAACCATTACAAGATGAGA-GAAGACATCAAAAGCTACAACCTCGGAGGAATGG 790
||| ||||| | || ||| | ||| | | |||| ||||| || || || |||||||
Sbjct 818 GATTGTGAATAAGTATAAGCTTAGAGGCA-ACATTTTGAGCTATAATCTTGGTGGAATGG 876
Query 791 GTTGCT-CTGCCGG-ATTAATCTCAATCGATCTCGC-AAACAACCT-CCTCA-AAGCAAA 845
| || | ||| || || ||||| || |||||||| |||| | | | ||| || ||
Sbjct 877 GATG-TAGTGCTGGCCTT-ATCTCCATTGATCTCGCTAAAC-AGATGCTTCAGGTGC-AA 932
Query 846 CCCTAATTCTTACGCTGTCGTGGTAAGCACGGAAAACATAACCCTAAACTGGTACTTCGG 905
|| || || ||||| | ||||| ||||| || ||||||||||||||||||||||| ||
Sbjct 933 -CCAAACTCATACGCACTAGTGGTGAGCACAGAGAACATAACCCTAAACTGGTACTTAGG 991
Query 906 AAATGACCGATCAATGCTCCTCTGC-AACTGCATCTTCCGAATGGGCGGAGCTGCGATTC 964
|| |||||||||||||| || | | ||||| |||||||| ||||||||||| ||| | |
Sbjct 992 CAACGACCGATCAATGCTTCTAT-CTAACTGTATCTTCCGTATGGGCGGAGCCGCGGTAC 1050
Query 965 TCCTTTCTAACCGC-CGACAAGACCGGAAGAAG-TCAAAGTACTC-GCTGGT-CA-ACGT 1019
| || || |||||| | | || | | || | ||||| || || ||| | || ||
Sbjct 1051 TTCTCTCGAACCGCTCCTC-TGATC-GCAGCCGTTCAAAATA-TCAGCTCATCCATAC-- 1105
Query 1020 CGTTCGAACGCATAAAGGATCAGACGACAAGAACTACAATT-GC-GTG--TA-C--C-AG 1071
||| || || || |||||| | || ||| ||| || || || ||| || | | ||
Sbjct 1106 CGTCCGTACCCACAAAGGAGCTGATGAC---AAC-GCATTTGGCTGTGTTTACCAACGAG 1161
Query 1072 AAG-GAA-GACG-AG-AG--A--GG-AACAATC-G-GTGTCTCTTTAGCTCGAGAGCTCA 1120
||| || ||| || || | || || |||| | ||||| || | || | | || |
Sbjct 1162 AAGACAACAACGCAGAAGAAACCGGCAA-AATCGGAGTGTCCCTCT--CTAAAAACCTAA 1218
Query 1121 TGTCTG-TTGCCGGAGACGCTCTGAAAACAAACATCACGACTTTAGGACCGA-TGGTTCT 1178
|| | | | || ||||| ||||| || ||||||||||| ||| | ||||| | | |||||
Sbjct 1219 TGGC-GATAGCTGGAGAAGCTCTCAAGACAAACATCACAACTCTCGGACC-ACTAGTTCT 1276
Query 1179 CCCATTGTCGGAAC-A-GT-TGATGTTCTTGATTTCAT-TGGTCAAAAGGAAGATGTTC- 1233
||| |||| |||| | | | | ||| || || | ||| | || ||| | |||
Sbjct 1277 ACCAATGTCCGAACAACTTCTCTTTTTCGCGA-CTCTTGTGGCCCGAA--AAG-TCTTCA 1332
Query 1234 AAG-CTA-AAAGTGAAA-CCGTATATTCCGGATTTCAAGCTAGCTTTCGAGCATTTCTGT 1290
||| | | ||| | ||| || || ||||| ||||||||||||||||||||||||||||||
Sbjct 1333 AAGTCAAGAAAAT-AAAGCCTTACATTCCTGATTTCAAGCTAGCTTTCGAGCATTTCTGT 1391
Query 1291 ATTCACGCAGGAGGTAGAGCGGTTCTAGACGA-AGTGCAGAAGAATCTTG-ATCTCAAA- 1347
|| ||||| ||||||||||| || || ||||| | || ||||||| |||| || | |
Sbjct 1392 ATCCACGCGGGAGGTAGAGCCGTGCTCGACGAGATTG-AGAAGAA-CTTGGATTT-ATCC 1448
Query 1348 GATTGGCACATGGAACCTTCTAGAATGACTTTGCACCGGTTTGGTAACACTTCGAGTAGC 1407
|| ||||||||||| || || || ||||| ||| ||||||||||||||||||||||||||
Sbjct 1449 GAATGGCACATGGAGCCATCGAGGATGACGTTGAACCGGTTTGGTAACACTTCGAGTAGC 1508
Query 1408 TCGCTTTGGTATGAGATGGCTTATACG-GAAGCTAAGGGTCGGGTTAA-AGCCGGTGATC 1465
|| |||||||||||| | || |||| | |||||||| || || |||| || || |||
Sbjct 1509 TCACTTTGGTATGAGCTTGCGTATA-GTGAAGCTAAAGGAAGGATTAAGAGA-GGAGATA 1566
Query 1466 G-ACTTTGGCAGATTGCGTTTGGATCGGGTTTCAAGTGTAATAGTGCGGTTTGGAAAGC 1523
| |||| |||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 1567 GGACTT-GGCAGATTGCTTTTGGATCGGGTTTTAAGTGTAATAGTGCAGTTTGGAAAGC 1624
> AT2G46720.1 | Symbols: HIC, KCS13 | 3-ketoacyl-CoA synthase 13
| chr2:19197383-19200221 FORWARD LENGTH=2839
Length=2839
Score = 132 bits (71), Expect = 1e-29
Identities = 288/389 (74%), Gaps = 30/389 (8%)
Strand=Plus/Plus
Query 616 GTTATGTTCGGAGC-CTTAGATTCCCTCTTCGAGAAAACCGGAATTAAACCG-GCCGAAG 673
||||| |||||||| |||| | || || ||| ||||||||||||| ||||| | ||||
Sbjct 1847 GTTATCTTCGGAGCTCTTA-ACTCACTATTCAAGAAAACCGGAATCGAACCGAGA-GAAG 1904
Query 674 TTGGAATCTTGATAGTAAACTGCAGCTTATTCAATCCGA-CGCCGTCTCTATCAG-CGAT 731
| |||||||| || |||||||||||||| || || || | | || ||||| || | | ||
Sbjct 1905 TCGGAATCTTCATTGTAAACTGCAGCTTGTTTAACCCTAAC-CCATCTCTCTC-GTCCAT 1962
Query 732 GATCGTGAACCATTACAAGATGAGAGAA--GACATCAAAAGCT-ACAACCTCGGAGGAAT 788
|||||| |||| |||||| | | | || ||| |||||| || |||| ||| || ||
Sbjct 1963 GATCGTAAACCGGTACAAGCTTA-A-AACCGACGTCAAAA-CTTACAATCTCTCCGGTAT 2019
Query 789 GGGTTGCT-CTGCCGGATTAATCTCAATCGATCTCGCAAACAAC-CTCCTCAAAG-CAAA 845
||| ||| | ||||| |||||| |||| ||||| | ||| || || |||| ||||
Sbjct 2020 GGGATGCAGC-GCCGGCGCAATCTCCGTCGACCTCGCCA-CAAATCTACT-AAAGGCAAA 2076
Query 846 CCCTAATTCTTACGCTGTCGTGGTAAGCACGGAAAACATAACCCTAAAC-TGGTACTTCG 904
||||||| | ||||| || | || || ||||| ||||| ||||||| | || || | ||
Sbjct 2077 CCCTAATACCTACGCAGTTATTGTTAGTACGGAGAACATGACCCTAAGCATG-TA-T-CG 2133
Query 905 -GA-AATGACCGATCAATGCTCCTCTGC-AACTG-CATCTTCCGAATGGGCGGAGCTGCG 960
| || ||||| |||||| | || | ||||| | | |||||| | || || ||||||
Sbjct 2134 AGGCAACGACCGGTCAATGTTAGTCC-CTAACTGTC-TATTCCGAGTAGGTGGCGCTGCG 2191
Query 961 ATTCTCCTTTCTAACCGCCGACAAGACCG 989
|| | || || ||||| | ||||||||
Sbjct 2192 GTTATGCTCTCAAACCGGAGTCAAGACCG 2220
> AT3G10280.1 | Symbols: KCS14 | 3-ketoacyl-CoA synthase 14 | chr3:3180064-3181588
FORWARD LENGTH=1380
Length=1380
Score = 58.4 bits (31), Expect = 2e-07
Identities = 35/37 (95%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 368 CCAACCGGACTAAACCGGTTTACCTAGTGGATTTCTC 404
||| |||| ||||||||||||||||||||||||||||
Sbjct 161 CCACCCGGTCTAAACCGGTTTACCTAGTGGATTTCTC 197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80421273090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5