BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg918883 Length=874 Score E Sequences producing significant alignments: (Bits) Value AT1G02330.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Hepatocel... 1399 0.0 > AT1G02330.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Hepatocellular carcinoma-associated antigen 59 (InterPro:IPR010756); Has 1239 Blast hits to 998 proteins in 204 species: Archae - 4; Bacteria - 71; Metazoa - 421; Fungi - 109; Plants - 87; Viruses - 5; Other Eukaryotes - 542 (source: NCBI BLink). | chr1:462075-463612 REVERSE LENGTH=1058 Length=1058 Score = 1399 bits (757), Expect = 0.0 Identities = 841/881 (95%), Gaps = 8/881 (1%) Strand=Plus/Plus Query 1 TCCGATAGTTTCTGTCTGCGATGCCACCGAAGAGAAATTTCAGGAAGCGTAGCTTCGAGG 60 |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 72 TCCGATAGTTTCTGGCTGCGATGCCGCCGAAGAGAAATTTCAGGAAGCGTAGCTTCGAGG 131 Query 61 AGGAAGAGGAAGATAATGATGTAAACAAAGCCGCAATTTCAGATGAAGAAGAGAAGCGAA 120 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 132 AGGAAGAAGAAGATAATGATGTAAACAAAGCCGCAATTTCAGAGGAAGAAGAGAAGCGAA 191 Query 121 GATTAGCGTTGGAGGAGGTGAAGTTTCTGCAGAAGCTGAGAGAGAGAAAATTAGGGATCC 180 |||| ||||| ||||||||||||||| ||||||||||| ||||||| |||||||| |||| Sbjct 192 GATTGGCGTTAGAGGAGGTGAAGTTTTTGCAGAAGCTGCGAGAGAGGAAATTAGGTATCC 251 Query 181 CAGCTTTA---TCTACGGCGCAATCTAGCATCGGAAAAGCGAAACCAGTGGAGAAAACTG 237 |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 252 CAGCTTTATCTTCTACGGCGCAATCTAGCATCGGAAAAGTGAAACCAGTGGAGAAAACTG 311 Query 238 AAGCTGAAGGAGAGAAAGAGGAGCTTGTGTTGCAAGATACTTTTGCTCAAGAGACTGCTG 297 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 312 AAACTGAAGGAGAGAAAGAGGAGCTTGTGTTGCAAGATACTTTTGCTCAAGAGACTGCTG 371 Query 298 TTTTGATTGAAGATCCCAACATGGTAAAGTACATTGAACAAGAATTGGCGAAGAAAAGGG 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 372 TTTTGATTGAAGATCCCAACATGGTAAAGTACATTGAACAAGAATTGGCGAAGAAACGGG 431 Query 358 GGAAGAA-TATTGATGATGCAGAGGAAGTTGAGAATGAATTGAAGCGAGTGGAAGATGAG 416 | ||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 432 G-AAGAAATATTGATGATGCAGAGGAGGTTGAGAACGAATTGAAGCGAGTGGAAGATGAG 490 Query 417 TTATATAAGATACCTGATCATCTTAAAGTTAAGAAGCGGAGCTCGGAAGAGAGCTCGACG 476 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 491 TTATATAAGATACCTGATCATCTTAAAGTCAAGAAGCGTAGCTCGGAAGAGAGCTCGACG 550 Query 477 CAATGGACTACCGGAATAGCAGAAGTCCAACTCCCAATCGAATACAAGCTGAAGAACATT 536 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 551 CAGTGGACTACCGGAATAGCAGAAGTCCAACTCCCAATTGAATACAAGCTGAAGAACATT 610 Query 537 GAAGAAACAGAAGCTGCCAAGAAGCTTCTGCAAGAGAGGAGGCTTATGGGTCGGCCAAAA 596 |||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 611 GAAGAAACTGAAGCTGCCAAGAAGCTTTTGCAAGAGAGGAGACTTATGGGTCGGCCAAAG 670 Query 597 TCAGAGTTTAGCATTCCGTCTAGTTATAGTGCGGATTACTTCCAACGCGGGAAAGATTAT 656 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 671 TCAGAGTTTAGTATCCCGTCTAGTTATAGTGCGGATTACTTCCAACGCGGGAAAGATTAT 730 Query 657 GCTGAGAAGCTTAGAAGAGAGCATCCTGAGCTATACAAAGATAGAGGAGGACCTCAAGCG 716 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 731 GCTGAGAAGCTTAGGAGAGAGCATCCTGAGCTATACAAAGATAGAGGAGGACCTCAAGCG 790 Query 717 GATGGTGAAGGTGCTAAACCTTCTACTAGCAGTAGTA--AC-AATAATGCTGATTCAGGG 773 || ||||||| ||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 791 GACGGTGAAGCAGCTAAACCTTCTACTAGCAGTAGTACTAATAATAATGCTGATTCAGGG 850 Query 774 AAAAGCAGACAAGCAGCAACTGATCAAATCATGTTAGAACGATTTCGCAAGAGAGAGCGT 833 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 851 AAAAGCAGACAAGCAGCAACTGATCAAATCATGTTGGAACGATTTCGCAAGAGAGAGCGT 910 Query 834 AACCGTGTAATGCGAAGATAAAAGTAAAAGCATGTTTGCAG 874 ||||||||||||||||||||||||||||| ||||||||||| Sbjct 911 AACCGTGTAATGCGAAGATAAAAGTAAAAACATGTTTGCAG 951 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42648790803 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5