BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918912
Length=622
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02080.1 | Symbols: ASAR1, ATSARA1C, ATSAR2, SAR2 | secretio... 630 4e-180
AT1G02620.1 | Symbols: | Ras-related small GTP-binding family ... 568 3e-161
> AT4G02080.1 | Symbols: ASAR1, ATSARA1C, ATSAR2, SAR2 | secretion-associated
RAS super family 2 | chr4:921454-922777 FORWARD
LENGTH=912
Length=912
Score = 630 bits (341), Expect = 4e-180
Identities = 503/582 (86%), Gaps = 8/582 (1%)
Strand=Plus/Plus
Query 21 ATGTTCTTGGTAGATTGGTTCTACGGCGTGCTCGCTTCGCTAGGTTTATGGCAGAAAGAA 80
|||||| || | ||||||||||| ||||| ||||||||| |||| ||||||||||||||
Sbjct 101 ATGTTCATGATCGATTGGTTCTATGGCGTTCTCGCTTCGTTAGGGTTATGGCAGAAAGAG 160
Query 81 GCCAAGATCTTGTTTCTAGGTCTCGATAATGCCGGTAAAACCACCT-TGCTTCACATGTT 139
|| |||||||||||||| || ||||||||||| |||||||||| || |||||||||||||
Sbjct 161 GCTAAGATCTTGTTTCTGGGACTCGATAATGCTGGTAAAACCA-CTCTGCTTCACATGTT 219
Query 140 GAAAGACGAGAGATTGGTGCAGCATCAACCAACTCAGCATCCAACCTCTGAAGAGCTTAG 199
|||||||||||||||||| |||||||| || || ||||||||||| |||||||| || ||
Sbjct 220 GAAAGACGAGAGATTGGTACAGCATCAGCCTACGCAGCATCCAACTTCTGAAGAACTCAG 279
Query 200 CATTGGCAAAATCAAATTCAAGGCTTTTGACTTGGGCGGTCATCAAATTGCACGAAGAGT 259
|||||| |||||||| || ||||||||||| ||||| ||||| || ||||| || || ||
Sbjct 280 CATTGGGAAAATCAAGTTTAAGGCTTTTGATTTGGGTGGTCACCAGATTGCTCGCAGGGT 339
Query 260 GTGGAAAGACTACTATGCTAAGGTTGATGCGGTGGTCTACTTAGTGGATGCTTATGACAA 319
||||| || |||||||||||||| || || ||||||||| |||| |||||||| |||||
Sbjct 340 CTGGAAGGATTACTATGCTAAGGTGGACGCTGTGGTCTACCTAGTTGATGCTTACGACAA 399
Query 320 GGAGAGATTTGCAGAATCAAAAAAGGAGCTTGATGCACTTCTCTCAGATGAATCCTTAGC 379
|||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||
Sbjct 400 AGAGAGATTTGCAGAATCAAAAAAGGAACTTGATGCACTTCTCTCAGACGAATCCCTAGC 459
Query 380 CA-CTGTCCCATTCCTCATCCTAGGGAACAAAATCGACATACCTTACGCTGCATCTGAGG 438
|| | || ||||||||||| ||||| ||||| || |||||||| || |||||||| ||||
Sbjct 460 CAGC-GTTCCATTCCTCATTCTAGGAAACAAGATAGACATACCGTATGCTGCATCAGAGG 518
Query 439 ACGAGCTTCGATACCATCTTGGTCTCTCCAATTTCACAACTGGTAAAGGC-AAAGTGAAT 497
||||||| || |||||||| || |||||||| ||||| || || ||||| |||||||||
Sbjct 519 ACGAGCTCCGTTACCATCTCGGCCTCTCCAACTTCACTACAGG-AAAGGGTAAAGTGAAT 577
Query 498 CTAACTGATTCGAATGTGAGACCATTGGAGGTGTTT-ATGTGCAGCATTGTTAGAAAAAT 556
||||| |||||||| || || ||||||||||| ||| |||||||||||||| || |||||
Sbjct 578 CTAACGGATTCGAACGTTAGGCCATTGGAGGT-TTTCATGTGCAGCATTGTCAGGAAAAT 636
Query 557 GGGATATGGTGAAGGCTTCAAGTGGCTCTCTCAATACATCAA 598
||| || || ||||| ||||| ||| | ||||||||||||||
Sbjct 637 GGGTTACGGAGAAGGTTTCAAATGGGTTTCTCAATACATCAA 678
> AT1G02620.1 | Symbols: | Ras-related small GTP-binding family
protein | chr1:557092-557986 FORWARD LENGTH=687
Length=687
Score = 568 bits (307), Expect = 3e-161
Identities = 332/344 (97%), Gaps = 1/344 (0%)
Strand=Plus/Plus
Query 280 AGGTTGATGCGGTGGTCTACTTAGTGGATGCTTATGACAAGGAGAGATTTGCAGAATCAA 339
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 47 AGGTTGATGCTCTGGTCTACTTAGTGGATGCTTATGACCAGGAGAGATTTGCAGAATCAA 106
Query 340 AAAAGGAGCTTGATGCACTTCTCTCAGATGAATCCTTAGCCACTGTCCCATTCCTCATCC 399
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 107 AAAAGGAGCTTGATGCACTTCTCTCAGACGAATCCTTAGCCACTGTCCCATTCCTCATCT 166
Query 400 TAGGGAACAAAATCGACATACCTTACGCTGCATCTGAGGACGAGCTTCGATACCATCTTG 459
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 167 TAGGAAACAAAATCGACATACCTTACGCTGCATCTGAGGACGAGCTTCGATTCCATCTTG 226
Query 460 GTCTCTCCAATTTCACAACTGGTAAAGGCAAAGTGAATCTAACTGATTCGAATGTGAGAC 519
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 GCCTCTCCAATTTCACAACTGGTAAAGGCAAAGTGAATCTAACTGATTCGAATGTGAGAC 286
Query 520 CATTGGAGGTGTTTATGTGCAGCATTGTTAGAAAAATGGGATATGGTGAAGGCTTCAAGT 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 CATTGGAGGTGTTTATGTGCAGCATTGTTAGAAAAATGGGATATGGTGAAGGCTTCAAGT 346
Query 580 GGCTCTCTCAATACATCAAATA-GATCGCGCTATCCCTTTGAGT 622
|||||||||||||||||||||| |||||| ||||| |||| |||
Sbjct 347 GGCTCTCTCAATACATCAAATAAGATCGCCCTATCGCTTTAAGT 390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29989785759
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5