BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg918919 Length=415 Score E Sequences producing significant alignments: (Bits) Value AT1G02680.1 | Symbols: TAF13 | TBP-associated factor 13 | chr1:... 599 7e-171 > AT1G02680.1 | Symbols: TAF13 | TBP-associated factor 13 | chr1:580625-582310 FORWARD LENGTH=907 Length=907 Score = 599 bits (324), Expect = 7e-171 Identities = 375/398 (94%), Gaps = 10/398 (3%) Strand=Plus/Plus Query 13 AGAAGAAGATGAGTAACACACCAGCAACGGC-G-G-------CGTCTAAATCGAAAGCTG 63 ||||| |||||||||||||||||||| |||| | | |||||||||||||||||| Sbjct 129 AGAAG-AGATGAGTAACACACCAGCAGCGGCGGCGTCATCATCGTCTAAATCGAAAGCTG 187 Query 64 CGGGAACTTCTCAGCCACAGGAAAAGCGCAAAACCCTCTTTCAGAAAGAATTGCAGCATA 123 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 188 CGGGAACTTCTCAGCCACAGGAAAAGCGCAAAACTCTCTTTCAAAAAGAATTGCAGCATA 247 Query 124 TGATGTATGGATTTGGCGACGAGCAAAACCCTCTTCCAGAGACTGTGGCGCTTGTAGAAG 183 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 248 TGATGTATGGATTTGGCGACGAGCAAAACCCTCTTCCAGAGTCTGTGGCGCTTGTAGAAG 307 Query 184 ACATTGTTGTGGAATACGTCACAGATTTGACACATAAGGCTCAAGAAATTGGTTCAAAGC 243 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 308 ACATTGTTGTGGAATACGTCACAGATTTGACACATAAAGCTCAAGAAATTGGTTCAAAGC 367 Query 244 GAGGAAGACTTCTAGTTGATGATTTCTTGTATCTTATCCGCAAGGATTTGCCAAAACTGA 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 368 GAGGAAGACTTCTAGTTGATGATTTCTTGTATCTTATCCGCAAGGATTTGCCAAAACTGA 427 Query 304 ACCGGTGTAGAGAACTGTTGGCGATGCAAGAAGAGCTGAAACAAGCACGCAAAGCTTTTG 363 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 428 ACCGCTGTAGAGAACTGTTGGCGATGCAGGAAGAGCTGAAACAAGCACGCAAAGCTTTTG 487 Query 364 ATGTGGATGAGAAGGAACTAGTTGATTGACCTTTCTTT 401 |||| || || |||||||| ||||||||| ||| |||| Sbjct 488 ATGTCGACGAAAAGGAACTCGTTGATTGATCTTGCTTT 525 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19654689859 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5