BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg918919

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G02680.1 | Symbols: TAF13 | TBP-associated factor 13 | chr1:...   599    7e-171


> AT1G02680.1 | Symbols: TAF13 | TBP-associated factor 13 | chr1:580625-582310 
FORWARD LENGTH=907
Length=907

 Score =  599 bits (324),  Expect = 7e-171
 Identities = 375/398 (94%), Gaps = 10/398 (3%)
 Strand=Plus/Plus

Query  13   AGAAGAAGATGAGTAACACACCAGCAACGGC-G-G-------CGTCTAAATCGAAAGCTG  63
            ||||| |||||||||||||||||||| |||| | |       ||||||||||||||||||
Sbjct  129  AGAAG-AGATGAGTAACACACCAGCAGCGGCGGCGTCATCATCGTCTAAATCGAAAGCTG  187

Query  64   CGGGAACTTCTCAGCCACAGGAAAAGCGCAAAACCCTCTTTCAGAAAGAATTGCAGCATA  123
            |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct  188  CGGGAACTTCTCAGCCACAGGAAAAGCGCAAAACTCTCTTTCAAAAAGAATTGCAGCATA  247

Query  124  TGATGTATGGATTTGGCGACGAGCAAAACCCTCTTCCAGAGACTGTGGCGCTTGTAGAAG  183
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  248  TGATGTATGGATTTGGCGACGAGCAAAACCCTCTTCCAGAGTCTGTGGCGCTTGTAGAAG  307

Query  184  ACATTGTTGTGGAATACGTCACAGATTTGACACATAAGGCTCAAGAAATTGGTTCAAAGC  243
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  308  ACATTGTTGTGGAATACGTCACAGATTTGACACATAAAGCTCAAGAAATTGGTTCAAAGC  367

Query  244  GAGGAAGACTTCTAGTTGATGATTTCTTGTATCTTATCCGCAAGGATTTGCCAAAACTGA  303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  368  GAGGAAGACTTCTAGTTGATGATTTCTTGTATCTTATCCGCAAGGATTTGCCAAAACTGA  427

Query  304  ACCGGTGTAGAGAACTGTTGGCGATGCAAGAAGAGCTGAAACAAGCACGCAAAGCTTTTG  363
            |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  428  ACCGCTGTAGAGAACTGTTGGCGATGCAGGAAGAGCTGAAACAAGCACGCAAAGCTTTTG  487

Query  364  ATGTGGATGAGAAGGAACTAGTTGATTGACCTTTCTTT  401
            |||| || || |||||||| ||||||||| ||| ||||
Sbjct  488  ATGTCGACGAAAAGGAACTCGTTGATTGATCTTGCTTT  525



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19654689859


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5