BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918978
Length=661
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03130.1 | Symbols: PSAD-2 | photosystem I subunit D-2 | chr... 1109 0.0
AT4G02770.1 | Symbols: PSAD-1 | photosystem I subunit D-1 | chr... 678 0.0
> AT1G03130.1 | Symbols: PSAD-2 | photosystem I subunit D-2 | chr1:753307-754198
REVERSE LENGTH=892
Length=892
Score = 1109 bits (600), Expect = 0.0
Identities = 635/651 (98%), Gaps = 5/651 (1%)
Strand=Plus/Plus
Query 10 AAACAGAAGAAACTATGGCAACTCAAGCCGCCGGAATCTTCAGCCCCGCCATAACAACCA 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 43 AAACAGAAGAAACTATGGCAACTCAAGCCGCCGGAATCTTCAGCCCCGCCATAACAACCA 102
Query 70 CTACTTCCGCCGTCAAGAAACTCCACCTCTTCTCAACAAGCCACCGTCCCAAGTCTCTCT 129
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 103 CTACTTCCGCCGTCAAGAAACTCCACCTCTTCTCATCAAGCCACCGTCCCAAGTCTCTCT 162
Query 130 CCTTCACCAAAACCGCCATCCGCGCCGAGAAAACAGAGTCCTCCTCTGCTGCCCCAGCCG 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 CCTTCACCAAAACCGCCATCCGCGCCGAGAAAACAGAGTCCTCCTCTGCTGCCCCAGCCG 222
Query 190 TGAAAGAAGAAGCTCCGGTTGGATTCACTCCCCCGCAGCTAGACCCAAACACACCATCAC 249
|| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TG--A-AAGAAGCTCCAGTTGGATTCACTCCCCCGCAGCTAGACCCAAACACACCATCAC 279
Query 250 CAATCTTCGCCGGAAGCACAGGAGGTCTCCTCCGTAAAGCACAAGTAGAGGAATTTTACG 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 CAATCTTCGCCGGAAGCACAGGAGGTCTCCTCCGTAAAGCACAAGTAGAGGAATTTTACG 339
Query 310 TCATCACATGGAACTCACCGAAGGAACAAATCTTTGAGATGCCAACAGGAGGAGCTGCGA 369
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 340 TGATCACATGGAACTCACCGAAAGAACAAATCTTTGAGATGCCAACAGGAGGAGCTGCGA 399
Query 370 TAATGAGAGAAGGACCGAATCTGTTGAAACTAGCGAGGAAAGAACAGTGCTTGGCTTTAG 429
|||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 400 TAATGAGAGAAGGACCGAATCTATTGAAACTGGCGAGGAAAGAACAGTGTTTGGCTTTAG 459
Query 430 GTACGAGGTTGAGGTCTAAA-TACAAGATCACTTACCAGTTTTACAGAGTGTTCCCTAAC 488
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 460 GTACGAGGTTGAGGTC-AAAGTACAAGATCACTTACCAGTTTTACAGAGTGTTCCCTAAC 518
Query 489 GGAGAGGTTCAATATCTTCACCCGAAAGATGGAGTTTATCCAGAGAAAGCGAATCCAGGA 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GGAGAGGTTCAATATCTTCACCCGAAAGATGGAGTTTATCCAGAGAAAGCGAATCCAGGA 578
Query 549 AGAGAAGGTGTTGGACTAAACATGAGATCCATCGGTAAAAATGTTAGTCCCATTGAGGTT 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 AGAGAAGGTGTTGGACTAAACATGAGATCCATCGGTAAAAATGTTAGTCCCATTGAGGTT 638
Query 609 AAATTCACTGGAAAACAATCTTATGATTTGTAAGGTTTGATTTCGTATTTT 659
||||||||||| |||||||||||||||||||||| ||| | ||||||||||
Sbjct 639 AAATTCACTGGGAAACAATCTTATGATTTGTAAGATTTTAATTCGTATTTT 689
> AT4G02770.1 | Symbols: PSAD-1 | photosystem I subunit D-1 | chr4:1229111-1229945
REVERSE LENGTH=835
Length=835
Score = 678 bits (367), Expect = 0.0
Identities = 562/655 (86%), Gaps = 17/655 (3%)
Strand=Plus/Plus
Query 1 AGAGAA-AG-GAAACAGAAGAAACTATGGCAACTCAAGCCGCCGGAATCTTCAGCCCCGC 58
|||||| || |||| | || |||| |||||||||||||||||||| ||||||| | ||||
Sbjct 50 AGAGAACAGAGAAA-A-AAAAAACAATGGCAACTCAAGCCGCCGGGATCTTCAACTCCGC 107
Query 59 CATAACAA---CCACTACTTCCGCCGTCAAGAAACTCCACCTCTTCTCAACAAGCCACCG 115
|||||||| || | || |||| |||||||||||||||| | |||||||||| ||||||
Sbjct 108 CATAACAACCGCCGCAACCTCCGGCGTCAAGAAACTCCACTTTTTCTCAACAACCCACCG 167
Query 116 TCCCAAGTCTCTCTCCTTCACCAAAACCGCCATCCGCGCCGAGAAAACAGAGTCCT---C 172
|||||| || |||||||||||||||||||| |||||||||||||||||||| |||| |
Sbjct 168 TCCCAAATCCCTCTCCTTCACCAAAACCGCAATCCGCGCCGAGAAAACAGATTCCTCCGC 227
Query 173 CTCTGCTGCCCCAG-CCGTG-AAAG-AAGAAGCTCCGGTTGGATTCACTCCCCCGCAGCT 229
| | ||||| ||| || | | | |||||||||| || |||||||| || ||||||||
Sbjct 228 CGCCGCTGCTGCAGCCCCCGCCACGAAAGAAGCTCCCGTGGGATTCACGCCACCGCAGCT 287
Query 230 AGACCCAAACACACCATCACCAATCTTCGCCGGAAGCACAGGAGGTCTCCTCCGTAAAGC 289
||||||||||||||| || || |||||||| |||||||| || ||||| || ||||||||
Sbjct 288 AGACCCAAACACACCGTCTCCGATCTTCGCTGGAAGCACCGGTGGTCTTCTACGTAAAGC 347
Query 290 ACAAGTAGAGGAATTTTACGTCATCACATGGAACTCACCGAAGGAACAAATCTTTGAGAT 349
||||| || || || ||||| ||||| |||||||||||||| ||||| |||||||||||
Sbjct 348 GCAAGTGGAAGAGTTCTACGTTATCACGTGGAACTCACCGAAAGAACAGATCTTTGAGAT 407
Query 350 GCCAACAGGAGGAGCTGCGATAATGAGAGAAGGACCGAATCTGT-TGAAACTAGCGAGGA 408
||| ||||||||||| ||||| ||||||||||| |||||||| | |||| ||||||||||
Sbjct 408 GCCGACAGGAGGAGCAGCGATCATGAGAGAAGGTCCGAATCT-TCTGAAGCTAGCGAGGA 466
Query 409 AAGAACAGTGCTTGGCTTTAGGTACGAGG-TTGAGGTCTAAATACAAGATCACTTACCAG 467
|||| ||||| || ||||| || || ||| || || || || ||||||||||||||||||
Sbjct 467 AAGAGCAGTGTTTAGCTTTGGGGACAAGGCTT-AGATCCAAGTACAAGATCACTTACCAG 525
Query 468 TTTTACAGAGTGTTCCCTAACGGAGAGGTTCAATATCTTCACCCGAAAGATGGAGTTTAT 527
|||||||||||||| |||||||| ||||||||||||||||| || |||||||| ||||||
Sbjct 526 TTTTACAGAGTGTTTCCTAACGGTGAGGTTCAATATCTTCATCCTAAAGATGGTGTTTAT 585
Query 528 CCAGAGAAAGCGAATCCAGGAAGAGAAGGTGTTGGACTAAACATGAGATCCATCGGTAAA 587
|||||||| |||||||||||||||||||||||||| || ||||||||||| || || |||
Sbjct 586 CCAGAGAAGGCGAATCCAGGAAGAGAAGGTGTTGGTCTCAACATGAGATCTATTGGGAAA 645
Query 588 AATGTTAGTCCCATTGAGGTTAAATTCACTGGAAAACAATCTTATGATTTGTAAG 642
||||||||||||||||| ||||| || ||||| |||||| ||||||||||||||
Sbjct 646 AATGTTAGTCCCATTGAAGTTAAGTTTACTGGCAAACAAAGTTATGATTTGTAAG 700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31948917492
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5