BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918979
Length=1295
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03140.1 | Symbols: | splicing factor Prp18 family protein ... 2211 0.0
AT1G54590.1 | Symbols: | INVOLVED IN: RNA splicing; LOCATED IN... 704 0.0
> AT1G03140.1 | Symbols: | splicing factor Prp18 family protein
| chr1:754371-756303 REVERSE LENGTH=1443
Length=1443
Score = 2211 bits (1197), Expect = 0.0
Identities = 1270/1304 (97%), Gaps = 9/1304 (1%)
Strand=Plus/Plus
Query 1 CGATTGAAGAAACCTTTCCGATGGATCTGCTCAGAGAAGAGATTCTGAAGAAACGGAAGA 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 61 CGATTGAAGAAACCTTTCCGATGGATCTGCTCAGGGAAGAGATTCTGAAGAAACGTAAGA 120
Query 61 GTCTAGCTGAGGAATCTGGTGGTAAGAAGTTCTTCAAGCGGTCTGAGATCGAGCAGAAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTCTAGCTGAGGAATCTGGTGGTAAGAAGTTCTTCAAGCGGTCTGAGATCGAGCAGAAGA 180
Query 121 AAATCCAGAAGCTTCGAGAAGAAGAACGACGCGAGCACGAGCTTAAGGCTCAGCGGAGA- 179
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAATCCAGAAGCTTCGAGAGGAAGAACGACGCGAGCACGAGCTTAAGGCTCAGCGGAGAG 240
Query 180 --------GCCGCTTCCGGTGGAGATGGAAAATTATCCGGTTCTGCTCCTGGTTCTTCTA 231
||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 241 CCGCCGCCGCCGCTTCCGGTGGAGATGGAAAATCATCCGGCTCTGCTCCTGGTTCTTCTA 300
Query 232 ACGCATCTGCATCTGCGTCTTCCAAATCCTCCGCATCGGACGCTGCTGCTATCGCCGATT 291
||||| || | |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 ACGCAGCTACGTCTGCGTCTTCCAAATCCTCTGCATCGGACGCTGCTGCTATCGCCGATT 360
Query 292 CAAAATCCCTAACCGACGAAAACCTAATTCTCCCGAGGCAGGAAGTGATTCGTCGTTTGA 351
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAAAAGCCCTAACCGACGAAAACCTAATTCTCCCGAGGCAGGAAGTGATTCGTCGTTTGA 420
Query 352 GATTCCTTAAGCAGCCGATGACTCTCTTCGGAGAAGACGATCAAGCGCGGCTCGATCGAC 411
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 421 GATTCCTTAAGCAGCCGATGACTCTCTTCGGAGAAGATGATCAATCGCGGCTCGATCGAC 480
Query 412 TCAAGTACGTTTTGAAGGAAGGATTGTTCGAGGTTGATAGCGATATGACTGAAGGACAGA 471
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 481 TCAAGTACGTTTTGAAGGAAGGATTGTTCGAGGTTGATAGTGATATGACTGAAGGACAGA 540
Query 472 CGAACGATTTCTTGCGTGACATCGCAGAGCTTaagaagaggcagaagagtggtatcatgg 531
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 541 CGAATGATTTCTTGCGTGACATCGCAGAGCTTAAGAAGAGGCAGAAGAGTGGTATGATGG 600
Query 532 gagataggaagaggaagagtagagatgagagaggaagagacgaaggtgatagaggtgaaa 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAGATAGGAAGAGGAAGAGTAGAGATGAGAGAGGAAGAGACGAAGGTGATAGAGGTGAAA 660
Query 592 cgagggaagaTGAACTTAGTGGTGGTGAATCGAGTGATGTTGATGCTGATAAAGATATGA 651
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CAAGGGAAGATGAACTTAGTGGTGGTGAATCGAGTGATGTTGATGCTGATAAAGATATGA 720
Query 652 AGCGTTTGAAAGCTAACTTTGAGGATCTATGCGATGAGGATAAGATCCTTGTGTTTTACA 711
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 721 AACGTTTGAAAGCTAACTTTGAGGATCTATGCGATGAGGATAAGATCCTTGTGTTTTATA 780
Query 712 AGAAGCTATTGATTGAATGGAAGCAGGAGCTTGATGCAATGGAGAACACTGAGAGGAGAA 771
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 781 AGAAGCTGTTGATTGAATGGAAACAGGAGCTTGATGCGATGGAGAACACTGAGAGGAGAA 840
Query 772 CTGCCAAAGGGAAACAGATGGTAGCCACTTTTAAGCAGTGTGCTAGGTATCTTGTTCCTC 831
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 841 CTGCAAAAGGGAAACAGATGGTAGCCACTTTTAAGCAGTGTGCTAGGTATCTAGTTCCTC 900
Query 832 TCTTCAACTTATGCAGGAAGAAGGGTTTACCAGCTGACATTCGTCAAGCTTTAATGGTGA 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCTTCAACTTATGCAGGAAGAAGGGTTTACCAGCTGACATTCGTCAAGCTTTAATGGTGA 960
Query 892 TGGTTAACCACTGCATAAAGCGAGACTACCTTGCTGCAATGGACCACTACATCAAACTAG 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TGGTTAACCACTGCATAAAGCGAGACTACCTTGCTGCAATGGACCACTACATCAAACTAG 1020
Query 952 CTATCGGGAACGCGCCATGGCCTATTGGAGTGACTATGGTTGGTATTCACGAACGTTCAG 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CTATCGGGAACGCGCCATGGCCTATTGGAGTGACTATGGTTGGTATTCACGAACGTTCAG 1080
Query 1012 CTCGAGAGAAGATTTACACCAACAGTGTTGCTCACATCATGAACGATGAAACCACTCGCA 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTCGAGAGAAGATTTACACCAACAGTGTTGCTCACATCATGAACGATGAAACCACTCGCA 1140
Query 1072 AGTATCTTCAGTCAGTTAAAAGACTGATGACTTTCTGTCAAAGACGTTATCCAACTATGC 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AGTATCTTCAGTCAGTTAAAAGACTGATGACTTTCTGTCAAAGACGTTATCCAACTATGC 1200
Query 1132 CTTCTAAAGCCGTTGAGTTCAATAGCTTAGCCAACGGAAGCGACTTACAGTCCTTGCTAG 1191
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1201 CTTCTAAAGCCGTTGAGTTCAATAGCTTAGCCAACGGAAGCGACTTACAGTCTTTGCTAG 1260
Query 1192 CCGAAGAGAGATTCTTTGGTGGTAATCGTGAACAGGTCTCAGAGGAGAGACTCCGGCTCA 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CCGAAGAGAGATTCTTTGGTGGTAATCGTGAACAGGTCTCAGAGGAGAGACTCCGGCTCA 1320
Query 1252 TGCCTTCTCAGAGCGAAAGCTAGTCTTACTGCGTTTTCTGCTTT 1295
||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1321 TGCCTTCTCAGAGCGAAAGCTAGTCTTACTGTGTTTTCTGCTTT 1364
> AT1G54590.1 | Symbols: | INVOLVED IN: RNA splicing; LOCATED
IN: spliceosomal complex; CONTAINS InterPro DOMAIN/s: Prp18
(InterPro:IPR004098); BEST Arabidopsis thaliana protein match
is: splicing factor Prp18 family protein (TAIR:AT1G03140.1);
Has 388 Blast hits to 388 proteins in 196 species: Archae
- 0; Bacteria - 0; Metazoa - 136; Fungi - 132; Plants - 48;
Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink). |
chr1:20391560-20393503 REVERSE LENGTH=1132
Length=1132
Score = 704 bits (381), Expect = 0.0
Identities = 568/657 (86%), Gaps = 17/657 (3%)
Strand=Plus/Plus
Query 631 TTGATGCTGATAA--A-GATATGAAGCGTTT-G-A-AAGCTAACTTT-GAGGATCTATGC 683
||| |||||| || | ||| |||||| ||| | | ||||||| ||| |||||| |||||
Sbjct 480 TTGGTGCTGAGAAGGAGGATTTGAAGCTTTTGGAAGAAGCTAA-TTTCGAGGATTTATGC 538
Query 684 GATGAGGATAAGATCCTTGTGTTTTACAAGAAGCTATTGATTGAATGGAAGCAGGAGCTT 743
|| ||||| |||||||||||||| | ||||||||| ||| |||||||||||||||| |||
Sbjct 539 GACGAGGACAAGATCCTTGTGTTCTGCAAGAAGCTGTTGCTTGAATGGAAGCAGGAACTT 598
Query 744 GATGCAATGGAGAACACTGAGAGGAGAACTGCCAAAGGGAAACAGATGGTAGCCACTTTT 803
|| || ||||| |||||||||||||||||||| | ||||||||||||| |||||||||||
Sbjct 599 GAGGCTATGGAAAACACTGAGAGGAGAACTGCTATAGGGAAACAGATGCTAGCCACTTTT 658
Query 804 AAGCAGTGTGCTAGGTATCTTGTTCCTCTCTTCAACTTATGCAGGAAGAAGGGTTTACCA 863
|| ||||||||||||||||| |||||||||| |||||||| |||| ||| ||||||||
Sbjct 659 AACCAGTGTGCTAGGTATCTAACTCCTCTCTTCCACTTATGCCGGAACAAGTGTTTACCA 718
Query 864 GCTGACATTCGTCAAGCTTTAATGGTGATGGTTAACCACTGCATAAAGCGAGACTACCTT 923
|||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||
Sbjct 719 GCTGACATTCGTCAAGGTTTAATGGTGATGGTTAACTGCTGGATAAAGCGAGATTACCTC 778
Query 924 GCTGCAATGGAC-CACTACATCAAACTAGCTATCGGGAACGCGCCATGGCCTATTGGAGT 982
| ||||| || | || | |||||||||||| || |||||||| |||||||| || || ||
Sbjct 779 GATGCAACGG-CTCAATTCATCAAACTAGCCATAGGGAACGCACCATGGCCCATCGGTGT 837
Query 983 GACTATGGTTGGTATTCACGAACGTTCAGCTCGAGAGAAGA-TT-TAC-ACCAACAGTGT 1039
||||||||||||||||||||||||||| || |||||||||| || ||| | || |||||
Sbjct 838 GACTATGGTTGGTATTCACGAACGTTCTGCCCGAGAGAAGATTTCTACTAGCAGTAGTGT 897
Query 1040 TGCTCACATCATGAACGATGAAACCACTCGCAAGTATCTTCAGTCAGTTAAAAGACTGAT 1099
||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||
Sbjct 898 TGCTCACATCATGAATAACGAAACCACTCGCAAGTATCTTCAGTCAGTTAAAAGATTGAT 957
Query 1100 GAC-TTTCTGTCAAAGACGTTATCCAACTATGCCTTCTAAAGCCGTTGAGTTCAATAGCT 1158
||| ||| |||||| |||||||| || || ||||||||||| || |||||||||||||||
Sbjct 958 GACATTT-TGTCAACGACGTTATTCAGCTTTGCCTTCTAAATCCATTGAGTTCAATAGCT 1016
Query 1159 TAGCCAACGGAAGCGACTTACAGTCCTTGCTAGCCGAAGAGAGATTCTTTGGTGGTAATC 1218
|||||||||||||| | ||||| || ||||| || |||||||||||||||| || | |||
Sbjct 1017 TAGCCAACGGAAGCAATTTACATTCGTTGCTCGCTGAAGAGAGATTCTTTGCTGCTGATC 1076
Query 1219 GTGAAC-AGGTCTCAGAGGAGAGACTCCGGCTCATGCCTTCTCAGAGCGAAAGCTAG 1274
| |||| || |||| |||||||||||| ||||||||||||||| || ||||| ||||
Sbjct 1077 GCGAACGAG-TCTCCGAGGAGAGACTCTGGCTCATGCCTTCTCTGAACGAAATCTAG 1132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63704491605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5