BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918993
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24670.2 | Symbols: | Cytidine/deoxycytidylate deaminase fa... 1851 0.0
> AT5G24670.2 | Symbols: | Cytidine/deoxycytidylate deaminase
family protein | chr5:8447954-8451078 FORWARD LENGTH=1800
Length=1800
Score = 1851 bits (1002), Expect = 0.0
Identities = 1165/1242 (94%), Gaps = 17/1242 (1%)
Strand=Plus/Plus
Query 15 AAAGATTATGGATTTAGATGCATGGGAAATCATCCATATACCTGAAAAGCCTGCATTGTC 74
||| |||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 548 AAA-ATTATGGATTCAGATGCATGGGAAATTATCCATATACCTGAAAAGCCTTCATTGTC 606
Query 75 ACCTGACCATCAGCCCACTGTAAAGGTATATGCGAGTCTAATTAAACCCAAATTTGCCAA 134
||||||||||||||||||||| ||||||||||| || ||||| ||||||| |||||||||
Sbjct 607 ACCTGACCATCAGCCCACTGTGAAGGTATATGCTAGCCTAATCAAACCCAGATTTGCCAA 666
Query 135 TATGATAGTCAGGCATTTATGTAAGATTGCTCCTCTAGAAGATCTTCGCCATGTTAAAAG 194
|| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 667 TACGATAGTGAGGCATTTATGTAAGATTGCTCCTCTAGAAGATCTTCGTCATGTTAAAAG 726
Query 195 GGTGAAGAAGAAGATTCTTCCAGA-------TA---G-C-GGTGAAACTCAGTTGACTGT 242
|||||||||||||||||| ||||| || | | ||||||||||||||||||||
Sbjct 727 GGTGAAGAAGAAGATTCTGCCAGATTGCGCTTATTGGACAGGTGAAACTCAGTTGACTGT 786
Query 243 CATCTTATGTCTAGCACCTGAGCACCACGATCAATTGAACAATATGCCACCTGATGTGCA 302
||||||||||||||||||||||||| ||||||| |||| | |||||||||||||||||
Sbjct 787 CATCTTATGTCTAGCACCTGAGCACAACGATCAGTTGAGTGACATGCCACCTGATGTGCA 846
Query 303 GAAACTCGTTGATCCCTATGAGTTGAGTCCTTTTATTACACAAGTATGCAAATATGCTGC 362
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 GAGACTCGTTGATCCCTATGAGTTGAGTCCTTTTATTACACAAGTATGCAAATATGCTGC 906
Query 363 GGTATCAAAAGAAGAGTGGGAAGAACAGAGTAAGATATGGCCAACTTCTTTTCACCCCCC 422
|||||| |||||||||||||||||||| |||||||||||||| ||||| ||||| || ||
Sbjct 907 GGTATCCAAAGAAGAGTGGGAAGAACAAAGTAAGATATGGCCTACTTCATTTCATCCACC 966
Query 423 AACTTACAATATAGATGGCATCGGTGGGTTCAGCGAGGAGGATACACAATCGATCTGCAA 482
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 967 AACCTACAATATAGATGGCATCGGTGGGTTCAGCGAGGAGGAAACACAATCAATCTGCAA 1026
Query 483 GTTCATGAGAGTTGTTATTGATATGGCAGTATCTGGTCATAAACCACTTGTAAATGCTGC 542
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1027 GTTCATGAGAGTTGTTATTGATATGGCAGTATCTGGTCATACACCACTTGTGAATGCTGC 1086
Query 543 AGTGATAGTTGATCCTTCAGTTAGGCGAATAATAGCTAGTGAAACTGATCAAGTATATGC 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 AGTGATAGTTGATCCTTCAGTTAGGCGAATAATAGCTAGTGAAACTGATCAAGTATATGC 1146
Query 603 ATCATCTGCTCCTCGCGACAAT-ACTAGCGCAGGGACCAGGCCCTTCAAGGAAACAGGGG 661
||||||||||||||| ||| || |||||||||| ||||||||||||| ||||||||||||
Sbjct 1147 ATCATCTGCTCCTCGTGAC-ATGACTAGCGCAGAGACCAGGCCCTTCGAGGAAACAGGGG 1205
Query 662 AAATATGCTTAAATGGCATACTTGAAAAACAGAATTGTTCGTTGTCTGCTGTTGCTTGTC 721
||||||| ||||||| || |||||||||||||||| |||| ||||||||| || ||||||
Sbjct 1206 AAATATGTTTAAATGACACACTTGAAAAACAGAATGGTTCATTGTCTGCTCTTTCTTGTC 1265
Query 722 TAAATCCCTGGCAATGGAGTTTGCAGCCGCATGACACTGAAATTTGTAGCCAATGGAATC 781
| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||
Sbjct 1266 TGAATCCCTGGCAATGGAGTTTGCAGCCGCATGACACTGAAAATTGTAGCCAGTGGCATC 1325
Query 782 CTCTTAGGCATGCTTCCATGGTTGCCATTGAATCTTCTTCGGCCAGAGATAGACATCTGT 841
|||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||
Sbjct 1326 CTCTTAGGCATGCTTCCATGGTTGCCATTGAATCCTCTTCTGCCAGAGATAGAAATCTGT 1385
Query 842 TTCCCAATTCATCCGAGATTTTTGGTCAGGATCATGTTCAGCCCTCAAATACAGATTCTC 901
|||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1386 TTCCCAATCCATCCAAGATTTTTGATCAGGATCATGTTCCGCCCTCAAATACAGATTCTC 1445
Query 902 CGGCTAAAAAGCAGAAAACAAGCAGTCAGAGTCCAGACGTCCAAAGTGACGGCGA-AGAA 960
||||||||||||||||||||||||||||||||||||||||||||| |||| || | ||||
Sbjct 1446 CGGCTAAAAAGCAGAAAACAAGCAGTCAGAGTCCAGACGTCCAAAATGACAGC-AGAGAA 1504
Query 961 GAGACTCTTAGACATCCTTCAATGGAAAGGCCGTACCTCTGCACTGGTTATGACATTTTC 1020
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 GAGACTGTTAGAGATCCTTCAATGGAAAGGCCGTACCTCTGCACTGGTTATGACATTTTC 1564
Query 1021 CTCCTGTTGGAGCCCTGTGCAATGTGTGCTATGGCGCTTGTGCATCAAAGAATAAAACGG 1080
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1565 CTCCTGTTGGAGCCTTGTACAATGTGTGCTATGGCGCTTGTGCATCAAAGAATAAAACGG 1624
Query 1081 ATTTTCTATGCTTTTCCAAACCCCACGGCAGGTGGTCTCGGGAGTGTTCATAGACTTCAA 1140
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1625 ATTTTCTATGCTTTTCCAAACACCACGGCAGGTGGTCTCGGGAGTGTTCATAGACTTCAA 1684
Query 1141 GGGGAAAAGAGTTTGAACCATCATTATGCAGTGTTTAGAGTTTTGCTGCCTGATGACGCA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1685 GGGGAAAAGAGTTTGAACCATCATTATGCAGTGTTTAGAGTTTTGCTGCCTGATGACGCA 1744
Query 1201 CTTAGGCAAATGACCATGGTCTAATGCATTGTTGTAGTCGAT 1242
||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1745 CTTAGACAAATGACCACGGTCTAATGCATTGTTGTAGTCGAT 1786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61144263810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5