BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919222
Length=1160
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05270.1 | Symbols: | TraB family protein | chr1:1531641-15... 1881 0.0
> AT1G05270.1 | Symbols: | TraB family protein | chr1:1531641-1534410
REVERSE LENGTH=1386
Length=1386
Score = 1881 bits (1018), Expect = 0.0
Identities = 1114/1161 (96%), Gaps = 4/1161 (0%)
Strand=Plus/Plus
Query 1 CCATCATCTCCTCGATTTCGATGACGATAGAGCCGACGCAATCATCGCCGTCGTCGGAGC 60
||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||
Sbjct 86 CCATCATCTCCTCGATTTCGATGACGATAGAGCCGACGC-A--ATCGCCGTCTTCGGAGC 142
Query 61 CGGAGGTCCACTCTGGCGAGGACTTCGTTCACATCGATGACCCTAGGCCTACCGGCGATA 120
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 CGGAGGTTCACTCTGGAGAGGACTTCGTTCACATCGATGACCCTAGGCCTACCGGCGATA 202
Query 121 TCTCGTTAAGTGACAGCATAGTGAATGTGGACAAGGATGAACTGCTCGACGAAGCGGCGG 180
|||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 203 TCTCTTTAAGCGACAGCATAGTTAATGTGGAGAAGGATGAACTGCTCGACGAAGCGGCGG 262
Query 181 AGGAAGAATTTAGAGGCTCCGATTCCGTTTTTAGCGGCGGCGATGGCGGTGGAGCGGATG 240
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 263 AGGAAGAATTTAGAGGCTCCGATTCTGTGTTTAGCGGCGGCGATGGCGGTGGAGCGGATG 322
Query 241 ATGATGGCGGCGAGAGTTCATCGGAGACGATTAAAGTGGAGCTACCGGAGGAATTGGCGA 300
|||||||||||||| ||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 323 ATGATGGCGGCGAGTGTTCATCGGAGGCTACTAAAGTGGAGCTACCGGAGGAATTGGCGA 382
Query 301 AAGGCGTTGTGATTCTGACGTGCGAGTCCACAGCGGATGGTGGATCTTGCGATGTGTACT 360
|| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 383 AAAGTGTTGTGATTCTGACGTGCGAGTCAACAGCGGATGGTGGATCTTGCGATGTGTACT 442
Query 361 TGGTTGGGACTGCTCATGTATCAAAGCAATCCTGTCTTGAAGTTGAAGCAATAATCAGCA 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 TGGTTGGTACTGCTCATGTATCAAAGCAATCCTGTCTTGAAGTTGAAGCAATAATCAGCA 502
Query 421 TCTTGAAACCAGAGGTTGTCTTCGTGGAGTTGTGTTCGAGCCGATTGTCTGTTCTCAAAC 480
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 503 TCTTGAAACCAGAGGTTGTCTTCGTTGAATTGTGTTCGAGCCGATTGTCTGTTCTCAAAC 562
Query 481 CTCAGACTTTGAAGATTCCAACCATGTCGGACATGATAGAAAGTTGGAAGCAGAAACAGA 540
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 CTCAAACATTGAAGATTCCAACCATGTCGGACATGATAGAAAGTTGGAAGCAGAAACAGA 622
Query 541 ACACATTTGGAATACTTTATGGATGGTTTCTTGCAAAGATCGCCAGTCATCTTGAGGTTT 600
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 ACACATTCGGAATACTTTATGGATGGTTTCTTGCAAAGATCGCCAGTCATCTTGAGGTTT 682
Query 601 TTCCTGGTGCTGAGTTTCGTGTAGCGTATGAAGAGGCGATTAAATATGGCGGCAAGGTGA 660
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 683 TTCCTGGTGCTGAGTTTCGTGTGGCGTATGAAGAGGCGATTAAATATGGCGGCAAGGTGA 742
Query 661 TACTTGGTGATCGTCCTGTACAGATTACGTTAAAAAGAACATGGGCCAAGATGCCTCTAT 720
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 743 TACTTGGTGATCGTCCTGTACAGATTACGTTAAAGAGAACATGGGCCAAGATGCCTCTAT 802
Query 721 GGCACAAGGTAAAGTTCTTATACTCCATACTGTTTCAAGCTGTCTTCTTGCCGAGCGCTG 780
|||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 803 GGCACAAGGTTAAGTTTTTATACTCCATACTGTTTCAAGCTGTCTTCTTGCCGGGCGCTG 862
Query 781 AGGAACTCGAGAAAATGCTGAAAGATATGGACAATGTGGATATGGTGACTTTGGTAATTC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 863 AGGAACTCGAGAAAATGCTGAAAGATATGGACAATGTGGATATGGTGACTTTGGTGATTC 922
Query 841 AAGAAATGAGCAAGGAATTTCCGACTCTCATGGATACAATTGTGCATGAGCGAGACCAGT 900
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 923 AAGAAATGAGCAAGGAATTTCCAACTCTCATGGATACAATTGTGCATGAGCGAGACCAGT 982
Query 901 ACATGGCATCCTCGTTGCTGAGAGTTGCAGGTGAGCATAGTTCGGTTGTAGCAGTTATCG 960
||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 983 ACATGGCATCCTCTTTGCTGAGAGTTGCAAGTGACCATAGTTCGGTTGTAGCAGTTATCG 1042
Query 961 GAAAAGGGCATATTAATGGAATTAAGAAGAATTGGAAGCAACCTATAACGATGAATGATC 1020
||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1043 GAAAAGGACATATTAATGGAATCAAGAAGAATTGGAAGCAACCTATTACGATGAATGATC 1102
Query 1021 TAATGGAGATACCGAGCGACCAGTCAGTGTTTACGATAAAGAGGATAATATCATCAGTGG 1080
||||||||||||| |||||| |||||||||||||| ||||||| ||||||||||||||||
Sbjct 1103 TAATGGAGATACCAAGCGACAAGTCAGTGTTTACGTTAAAGAGAATAATATCATCAGTGG 1162
Query 1081 CAATTGCAGTTGCAGGGACAGCTATAGTTTCGGGTATACTTCTTGCAAGAAGAAGGTGAA 1140
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1163 CAGTTGCAGTTGCAGGGACAGCTATAGTTTCGGGTATACTTCTTTCAAGAAGAAAGTGAA 1222
Query 1141 AAAT-ATTGTAATTGGGGCAG 1160
||| ||||||||||||||||
Sbjct 1223 AAAGGATTGTAATTGGGGCAG 1243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56927418030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5