BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919273
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05690.1 | Symbols: BT3 | BTB and TAZ domain protein 3 | chr... 1912 0.0
> AT1G05690.1 | Symbols: BT3 | BTB and TAZ domain protein 3 | chr1:1707011-1709347
FORWARD LENGTH=1660
Length=1660
Score = 1912 bits (1035), Expect = 0.0
Identities = 1193/1268 (94%), Gaps = 16/1268 (1%)
Strand=Plus/Plus
Query 1 TTTTCAATTCTCGGGTTTGATTTGATGGCTTCTTCAGATGATACATTCTCACAAGTGATC 60
|||||||||| ||||||||||| || |||||||||||| |||||||||| |||||| ||
Sbjct 206 TTTTCAATTCGCGGGTTTGATTCCATAGCTTCTTCAGATCATACATTCTCGCAAGTGTTC 265
Query 61 GATATAGGAGTAGAAGAAGAAGAAGAGTCTTTCTATGCACCTGATGATGATGTCTTGACT 120
|||| || | || |||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 266 GATA-CGG-G-AGTAGAAGAAGAAGAGTCTTTCTATGCTCCTGATCATGATGTCTTGACT 322
Query 121 CTGCTTCAACCT-ACTTCACCACCAACGATATCTAGT-G--CCAAGAACATTCCAAAACC 176
|||||||||||| ||||||||| ||||||| |||||| | |||||||||||||||||||
Sbjct 323 CTGCTTCAACCTAACTTCACCAGCAACGATGTCTAGTAGTACCAAGAACATTCCAAAACC 382
Query 177 TCCTCCTCTTCCTTGTATTACCTACCAGCGTTTCCAAGCTAGTACAAGGAAAACTTCTAG 236
||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||| ||
Sbjct 383 TCCTCCTCTTCCTTGTATTACCTACCAGCGTTTTCAATCTAGTACAAGGAAACCTTCGAG 442
Query 237 CTT-ATCGCGCCTTGTGCCTAAAGAAGCAGTAGAAACTTGGGATAAGCTTTTTAAGGAAG 295
||| || |||||||||||||||||||||| | |||||||||||||||||||| |||||||
Sbjct 443 CTTAAT-GCGCCTTGTGCCTAAAGAAGCACTTGAAACTTGGGATAAGCTTTTCAAGGAAG 501
Query 296 GATTTGGAGCAGATACATATGTTGAAACCGATAACAAATCTCACTTTCCTGCCCATTCAA 355
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 502 GATCTGGAGCAGATACATATGTTGAAACCGATAACAAGTCTCACTTTCCTGCCCATTCAA 561
Query 356 GTGTCCTGGCTGCAGCCTCACCAGTTATGGCGAAACTTTTGAATCAATCGAGGGATAAAA 415
|||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||| |
Sbjct 562 GTGTCCTGGCTGCAGCCTCACCAGTTATAGCGACACTTCTGAATCAATCGAGGGATAAGA 621
Query 416 ATGGGAAAACATACCTCAAAATCCCCGGAGTGCCTTATGAAGCAGTCCACATGTTCATTC 475
||||||| |||||||||||||||| ||||| |||| |||||||||| |||||||||||
Sbjct 622 ATGGGAATACATACCTCAAAATCCATGGAGTTCCTTGTGAAGCAGTCTACATGTTCATTA 681
Query 476 GGTTTCTATACTCTTCCTGCTACGAGGAGGAAGAAATGAAGAAGTATGTGCTCCACTTAT 535
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 682 GGTTTCTATACTCTTCCTGCTACGAGGAGGAAGAAATGAAGAAGTTTGTGCTCCATTTAT 741
Query 536 TGGTTCTGTCACATTGCTACTCGGTCCCATCTCTTAAAAGAGTTTGTGTAGAGATTCTCG 595
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 742 TGGTTCTGTCACATTGCTACTCGGTCCCATCTCTTAAAAGACTTTGTGTAGAGATTCTCG 801
Query 596 ATCAAGGATGGATTAACAAGGAGAATGTGATAGACGTGCTACAATTAGCAAGAAACTGTG 655
||||||||||||||||||||||||||||||| || ||||| ||| |||| ||||||||||
Sbjct 802 ATCAAGGATGGATTAACAAGGAGAATGTGATCGATGTGCTTCAACTAGCGAGAAACTGTG 861
Query 656 ACGCT-ACAAGGATTTGCTTTGTATGTCTTTCCATGGTCATCAAAGACTTCAAATCTGTA 714
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 ACG-TGACAAGGATTTGCTTTGTATGTCTTTCCATGGTCATCAAAGACTTCAAATCTGTA 920
Query 715 TCTTCAACAGAGGGATGGAAAGTGATGAAACGCGCTAATCCTTTGCTTGAACAAGAGCTC 774
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 921 TCTTCAACAGAGGGATGGAAAGTGATGAAACGCTCTAATCCTTTGCTCGAACAAGAGCTC 980
Query 775 ATTGAGGCAGTCATCGAAGCAGACACTAGGAAACAAGAAAGAAGGAA-AAAACTTGAGGA 833
|||||||||||||||||| | |||| ||||||||||||||||| ||| |||||| |||||
Sbjct 981 ATTGAGGCAGTCATCGAATCCGACAGTAGGAAACAAGAAAGAA-GAAGAAAACTGGAGGA 1039
Query 834 GAGAGAAGTGTATATGCAGCTTTATGAAGCCATGGAAGCTCTTGTCCACATATGTAGCGA 893
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 1040 GAGAGAAGTGTATTTGCAGCTCTATGAAGCCATGGAAGCTCTTGTCCACATATGTCGTGA 1099
Query 894 AGGTTGTGGGACAATTGGACCTCGCGATAAGGCCCTTAAAGGAAGCCATACCGTGTGTAA 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 AGGTTGTGGGACAATTGGACCTCGCGATAAGGCCCTTAAAGGAAGCCATACCGTGTGTAA 1159
Query 954 ATTCCCGGCGTGTAAAGGGCTTGAAGGTGCGCTCAGACATTTCTTGGGATGCAAGTCCAG 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1160 ATTCCCGGCGTGTAAAGGGCTTGAAGGTGCGCTCAGACATTTCTTGGGATGCAAGTCTAG 1219
Query 1014 GGCTTCATGT-CTTCATTGCAAAAGAATGTGGCAGCTTCTTCAGCTTCACTCTTGTATCT 1072
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1220 GGCTTCATGTTCT-CATTGCAAAAGGATGTGGCAGCTTCTTCAGCTTCACTCTTGTATCT 1278
Query 1073 GTGACGATTCTAATTCTTGCAAAGTTTCTCTCTGCTGGAATTTCAAGGAGAAAATGAAGA 1132
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 GTGATGATTCTAATTCTTGCAAAGTTTCTCTCTGCTGGAATTTCAAGGAGAAAATGAAGA 1338
Query 1133 AGCTTAGCAAGAAAGAACAATCTAAATGGCGATTGCTTGTAGAAAACATTATTACGGCGA 1192
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1339 AGCTTAGCAAGAAAGAACAATCTAAATGGCGATTGCTTGTAGAAAACATTATTAGGGCGA 1398
Query 1193 AGAACAGTCTCGGGCCCTTCTCTTCACGTCCTTCTGGTTTGATATAGAA-CAGGTTTTAG 1251
||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||
Sbjct 1399 GGAACAGTCTCGGGCCCTTCTCGTCACGTTCTTCTGGTTTGATATAGAAACAGGTTTTAG 1458
Query 1252 TTTTTAGT 1259
|||||||
Sbjct 1459 ATTTTAGT 1466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61897271985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5