BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919315
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06080.1 | Symbols: ADS1 | delta 9 desaturase 1 | chr1:18435... 1585 0.0
AT2G31360.1 | Symbols: ADS2, DS2 | 16:0delta9 desaturase 2 | ch... 616 2e-175
> AT1G06080.1 | Symbols: ADS1 | delta 9 desaturase 1 | chr1:1843568-1846302
FORWARD LENGTH=1220
Length=1220
Score = 1585 bits (858), Expect = 0.0
Identities = 928/962 (96%), Gaps = 4/962 (0%)
Strand=Plus/Plus
Query 1 ATACATAATTTTCTTTCAAGATGTCATTGTCAGCCTCAGAGAAGGAGGAGAACCATC-GG 59
||||||| |||| || ||||||||||||||||||||| |||||||||||||| | | |
Sbjct 74 ATACATAGTTTTATTACAAGATGTCATTGTCAGCCTCGGAGAAGGAGGAGAA-TAACAAG 132
Query 60 AAAATGGCTGCGGACAAGGCTGAGAAGGGGAGGAAGAAGAGGGCATTGTGGGAAAGAAAG 119
|||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 133 AAAATGGCAGCGGACAAGGCTGAGATGGGGAGGAAGAAGAGGGCAATGTGGGAAAGAAAG 192
Query 120 TGGAAGAGATTGGACATTGTGAAAGCTTTTGCTTCTCTCTTTGTGCATTTCCTCTGTCTC 179
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 193 TGGAAGAGATTGGACATTGTGAAAGCTTTTGCATCTCTCTTTGTCCATTTCCTCTGTCTC 252
Query 180 TTGGCTCCTTTCAATTTCACTTGGCCGGCTTTAAGAGTCGCCCTCATTGTCTATACGGTG 239
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 TTGGCGCCTTTCAATTTCACTTGGCCGGCTTTAAGAGTCGCCCTCATTGTCTATACGGTG 312
Query 240 GGTGGGCTCGGTATCACCGTCTCTTACCACCGAAATTTGGCTCACCGGAGCTTCAAAGTC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 GGTGGGCTCGGTATCACCGTCTCTTACCACCGAAATTTGGCTCACCGGAGCTTCAAAGTC 372
Query 300 CCTAAATGGCTCGAGTATTTCTTCGCCTATTGTGGCCTTCTCGCCATTCAGGGAGATCCG 359
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 373 CCTAAATGGCTCGAGTATTTCTTCGCTTATTGCGGCCTTCTTGCCATTCAGGGAGATCCG 432
Query 360 ATTGATTGGGTGAGCACACATCGATACCATCACCAGTTTACAGATTCGGATAGGGACCCA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 ATTGATTGGGTGAGCACACATCGATACCATCACCAGTTTACAGATTCGGATAGGGACCCA 492
Query 420 CATAGTCCTAATGAAGGATTTTGGTTTAGTCACCTCCTATGGCTATTTGATACCGGTTAT 479
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 493 CATAGTCCTAACGAAGGATTTTGGTTCAGTCACCTCCTATGGCTATTTGATACCGGTTAT 552
Query 480 CTTGTAGAAAAGTGTGGAAGAAGGACAAATGTGGAGGACTTAAAGAAGCAGTGGTACTAT 539
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 553 CTTGTAGAAAAGTGTGGAAGAAGGACAAATGTGGAGGACTTAAAGAGGCAGTGGTACTAT 612
Query 540 AAATTCCTTCAAAGAACAGTCCTTTACCACATTCTAGCATTTGGTTTCCTCCTCTATTAC 599
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 613 AAATTCCTCCAAAGAACAGTCCTTTACCACATTCTAACATTTGGTTTCCTCCTCTATTAC 672
Query 600 TTTGGTGGTTTGTCTTTTCTTACTTGGGGAATGGGTATTGGGGTAGCGATGGAGCATCAT 659
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 673 TTTGGTGGTTTGTCTTTTCTTACTTGGGGAATGGGTATTGGGGTAGCAATGGAGCATCAT 732
Query 660 GTGACTTGCCTCATCAACTCTCTTTGCCATGTTTGGGGAAGCCGGACTTGGAAGACTAAT 719
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 733 GTGACTTGCCTCATAAACTCTCTTTGCCATGTTTGGGGAAGCCGAACTTGGAAGACTAAT 792
Query 720 GACACTTCCCGTAACGTTTGGTGGCTATCAGTATTCTCGTTTGGAGAGAGCTGGCACAAC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 GACACTTCCCGTAACGTTTGGTGGCTATCAGTATTCTCGTTTGGAGAGAGCTGGCACAAC 852
Query 780 AATCACCACGCCTTCGAGTCCTCGGCGAGACAAGGCTTGGAATGGTGGCAAATCGACATT 839
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 853 AATCACCACGCCTTCGAATCCTCGGCGAGACAAGGCTTAGAATGGTGGCAAATCGACATT 912
Query 840 TCTTGGTATATTGTCCGCTTTCTCGAGATTATCGGCTTGGCTACTGATGTCAAGTTGCCT 899
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 913 TCTTGGTATATTGTCCGCTTTCTCGAGATTATCGGTTTGGCTACTGATGTTAAGTTGCCT 972
Query 900 TCCGAGAGTCAACGACGTCGCATGGCAATGGTTCGTTGAAGAT--GGAACGACGTCTCGT 957
|||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 973 TCCGAGAGTCAACGTCGTCGTATGGCAATGGTTCGTTGAAGATATGGAACGACGTCTCGT 1032
Query 958 CT 959
||
Sbjct 1033 CT 1034
> AT2G31360.1 | Symbols: ADS2, DS2 | 16:0delta9 desaturase 2 |
chr2:13371658-13373606 REVERSE LENGTH=1447
Length=1447
Score = 616 bits (333), Expect = 2e-175
Identities = 686/852 (81%), Gaps = 42/852 (5%)
Strand=Plus/Plus
Query 108 TGGGAAAGAAAGTGGAAGAGATTGGACAT-TGTGAAAGCTT-T-TGCTTCTCTCTTTGTG 164
||||| |||| ||||| |||||| || | ||||||| || | |||||| || |||
Sbjct 154 TGGGATAGAAGGTGGAGGAGATTAGA-TTATGTGAAA--TTCTCAGCTTCTTTCACTGTT 210
Query 165 CATTTCCTC-TG-TCTCTTGGCTCC-TTTCAATTTCACTTGGCCGGCT-TTAAGAGTCGC 220
|| || ||| || |||||||||||| ||| ||||||||||| ||||| || | ||
Sbjct 211 CA-TT-CTCTTGCTCTCTTGGCTCCGTTT-TATTTCACTTGGTCGGCTCTT-TGGGT-TA 265
Query 221 CCTCATTG-TCTATACGGTGGGTGGGCTCGGTATCACCGTCTCTTACCACCGAAATTTGG 279
| | ||| | || || | ||||| || ||||||||||||||||| || || || ||||
Sbjct 266 CGTTTTTGTTTTACACCATCGGTGGTCTTGGTATCACCGTCTCTTATCATCGCAACTTGG 325
Query 280 CTCACCGGAGCTTCAAAGTCCCTAAATGGCTCGAGTATTTCTTCGCCTATTGTGGCCTTC 339
|||||||||| |||||||||||||||||||| |||||| |||| |||||||||| |||||
Sbjct 326 CTCACCGGAGTTTCAAAGTCCCTAAATGGCTTGAGTATCTCTTAGCCTATTGTGCCCTTC 385
Query 340 TCGCCATTCAGGGAGATCCGATTGATTGGGTGAGCACACATCGATACCATCACCAGTTTA 399
|||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 386 TCGCTATTCAGGGAGATCCGATTGATTGGGTGAGTACACATCGTTACCATCACCAGTTCA 445
Query 400 CAGATTCGGATAGG-GACCCACATAGTCCTAATGAAGGATTTTGGTTTAGTCACCTCCTA 458
| ||||| || | | || |||||||||||||| ||||| |||||||||||||| || ||
Sbjct 446 CGGATTCAGA-ACGTGATCCACATAGTCCTAAGGAAGGTTTTTGGTTTAGTCATCTTCTT 504
Query 459 TGGCTATTTGA-TACCGGTTATCTTGTAGAAAAGTGTGGAAGAAG-GACAAATGTGGAGG 516
||| | | ||| | | | |||||||| ||||||||||||||| | |||| |||||||
Sbjct 505 TGGATCTATGACT-CTGCCTATCTTGTTTCAAAGTGTGGAAGAAGAG-CAAACGTGGAGG 562
Query 517 ACTTAAAGAAGCAGTGGTACTATAAATTCCTTCA-AAGAACAGTCCT-TTACCACATTCT 574
| || |||| ||| |||| |||| || ||||| || |||||| || || | ||||| |
Sbjct 563 ATTTGAAGAGGCAATGGTTTTATAGGTTTCTTCAGAA-AACAGTGCTATTTC-ACATTTT 620
Query 575 AGCATTTGGTTTCCTCCTCTAT-TACTTTGGTGGTTTGTCTTTTC-TTACTTGGGGAATG 632
|| ||| |||||| | |||| | ||| ||||||| |||| || | ||||||||||||||
Sbjct 621 AGGATTGGGTTTCTTTCTCT-TCTACCTTGGTGGCATGTCCTT-CGTTACTTGGGGAATG 678
Query 633 GGTATTGGGGTAGCGAT-GGA-GCATCATGTGACTTGCCTCATCAACTCTCTTTGCCATG 690
|| | || | ||| || ||| | || |||||||||||||| || || || ||||||
Sbjct 679 GGGGTAGGAGCAGC-ATTGGAAGTG-CACGTGACTTGCCTCATAAATTCACTCTGCCATA 736
Query 691 TTTGGGGAAGC-CGGACTTGGAAGACTAATGACACTTCCCGTAACGTTTGGTGGCTATCA 749
||||||| | | || ||||||||||| ||||||||||| ||||| ||||||||| ||||
Sbjct 737 TTTGGGGCA-CTCGAACTTGGAAGACCAATGACACTTCTCGTAATGTTTGGTGGTTATCG 795
Query 750 GTATTCTCGTTTGGAGAGAGCTGGCACAACAATCACCACGCCTTCGAGTCCTCGGCGAGA 809
||||| || ||||||||||| |||||||||||||| || || |||||||| ||||| |||
Sbjct 796 GTATTTTCATTTGGAGAGAGTTGGCACAACAATCATCATGCGTTCGAGTCATCGGCTAGA 855
Query 810 CAAGG-CTTGGAATGGTGGCAAATCGACATTTCTTGGTATATTGTCCGCTTTCTCGAGAT 868
||||| |||| ||||||||||||| |||||||| ||||| ||||| || ||| |||| ||
Sbjct 856 CAAGGACTTG-AATGGTGGCAAATAGACATTTCGTGGTACATTGTTCGGTTTTTCGAAAT 914
Query 869 TATCGGCTTGGCTACTGATGTCAA-GTTGCCTTCCGAGAG-TCAACGACGTCGCATGGCA 926
|||||| || || || ||||| || || ||| | ||| | |||||||||||| |||||
Sbjct 915 TATCGGTTTAGCGACCGATGTGAAAGT-GCCAACGGAG-GCTCAACGACGTCGTATGGCT 972
Query 927 ATGGTTCGTTGA 938
|| |||||||||
Sbjct 973 ATAGTTCGTTGA 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46918693298
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5