BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919368
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06510.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1175 0.0
> AT1G06510.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; Has 376 Blast hits
to 369 proteins in 152 species: Archae - 5; Bacteria - 113;
Metazoa - 105; Fungi - 46; Plants - 27; Viruses - 2; Other Eukaryotes
- 78 (source: NCBI BLink). | chr1:1992333-1993840
FORWARD LENGTH=1147
Length=1147
Score = 1175 bits (636), Expect = 0.0
Identities = 741/790 (94%), Gaps = 13/790 (2%)
Strand=Plus/Plus
Query 74 TGCTTCTGC-GTCACAGCAAATTCCGACCTTCTTCGCTCCCAGCTCGATCGGCTTCACGC 132
||||||| | | ||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 129 TGCTTCT-CTGCCACCGCAAATTCTGACCTTCTTCGCTCCCAGCTTGATCGGCTTCACGC 187
Query 133 GGAGGCAGAGTCCACCCGTGCCAAAGCAAACAGTAATAGGTTGAGACTTCTGAGATTATC 192
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 188 GGAGGCAGAGTCCACTCGTGCCAAAGCAAACAGTAATAGGTTGAGACTTTTGAGATTATC 247
Query 193 TGAGGCTGCTGAGAATCTACGCAAACAAGCAGCTGTGAATGTTCAAACAGGGAAAGAGAA 252
||||||||| ||||||||||| ||||||||||||| ||||||| |||||||||||||||
Sbjct 248 TGAGGCTGCAGAGAATCTACGGGAACAAGCAGCTGTCAATGTTCGAACAGGGAAAGAGAA 307
Query 253 TGATGCAAGAGAGT-TACTTGTTCAGAAGAAAAAGGTTATGCAAGCTTTGGACAAGGCAA 311
|||||| ||||| | ||||| ||||||||||||| ||||||||||||||||||||||| |
Sbjct 308 TGATGCCAGAGA-TCTACTTCTTCAGAAGAAAAAAGTTATGCAAGCTTTGGACAAGGCTA 366
Query 312 AAGCTCGTATTGAGTTGCTCGATACGCTTTCTTCTAAACTTAACGAGGCAATATCTGTCA 371
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 367 AAGCTCGTATCGAGTTGCTCGATACGCTTTCTTCCAAACTTAACGAGGCAATATCTGTCA 426
Query 372 AGGAAACACAGCTGATAGGCAATATATCTTTGGATCTCGAAGAGGATGGAGAGAATAGTA 431
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 AGGAAACACAGCTGATAGGCAATATATCTTTGGATCTCGAAGAGGATGGAGAGAATA--- 483
Query 432 CTTCAGGTGGAATCCACATTGTATCGCCAAAGCCCAAATCTACTGAAGACAGGCACGCAA 491
|||||||||| |||||||||||||||||||||||| |||||||||||||| || || ||
Sbjct 484 CTTCAGGTGGTATCCACATTGTATCGCCAAAGCCCGAATCTACTGAAGACGGGGTCGAAA 543
Query 492 ATGACTACACTCACTTGGATTCTGTGGGAAGTCAACTTATTGAAAGGAAT-TCTGAGGAT 550
||||| |||||||||||||||||| ||||| ||||||||||||||||||| | |||||||
Sbjct 544 ATGACCACACTCACTTGGATTCTGAGGGAATTCAACTTATTGAAAGGAATGT-TGAGGAT 602
Query 551 TACCAAGAACTTCTCGATACCGATAATCATGTACTAGAAGATGTTTCAACT-GGTAGCAT 609
|||||||||||||| |||||| ||||| ||||||||||||||||||||| | ||||||||
Sbjct 603 TACCAAGAACTTCTTGATACCAATAATAATGTACTAGAAGATGTTTCAA-TAGGTAGCAT 661
Query 610 CCTTAAAGAAGTGTCTTCTTATGAATCTTTCTTGGAAAATTTAGACCAGAAACTTAGCAG 669
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 CCTGAAAGAAGTGTCTTCTTATGAATCTTTCTTGGAAAATTTAGACCAGAAACTTAGCAG 721
Query 670 AATCGAAGCTGAACTAGTCACTGTTGTGAATGTTGCATTCTTGGTGCTTAATCATGAAGA 729
|||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||
Sbjct 722 AATCGAAGCTGAACTAGTTACTGTTGTAAATGTTGCATCCTTGGTGCTTAATCATGAAGA 781
Query 730 TAAACCCAAGAATCTAAAGGTTCAGCAGACTGCAGAAATTCTTGAAGAGATTCGTCGTGT 789
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TAAACCCAAGAATCTTAAGGTTCAGCAGACTGCAGAAATTCTTGAAGAGATTCGTCGTGT 841
Query 790 GAGGGAAAGAATCGCAGATATCATTTGCAAGGAGGCAAACATCAGTTAGTGTGCATT-AA 848
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 842 GAGGGAAAGAATCGCAAATATCATTTGCAAAGAGGCAAACATCAGTTAGTGTGC-TTCAA 900
Query 849 GCATTACTTA 858
||||||||||
Sbjct 901 GCATTACTTA 910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5