BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919374
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06570.1 | Symbols: PDS1, HPD | phytoene desaturation 1 | ch... 2211 0.0
> AT1G06570.1 | Symbols: PDS1, HPD | phytoene desaturation 1 |
chr1:2011885-2013545 REVERSE LENGTH=1554
Length=1554
Score = 2211 bits (1197), Expect = 0.0
Identities = 1353/1429 (95%), Gaps = 8/1429 (1%)
Strand=Plus/Plus
Query 1 TAGCAGAGTTGGTGAAATCAATGGGCCACGAGAACGCCGCCGTTTCGGATATTCAACATC 60
||||||||||||||||||||||||||||| | |||||||||||||| || | |||| | |
Sbjct 67 TAGCAGAGTTGGTGAAATCAATGGGCCACCAAAACGCCGCCGTTTCAGAGAATCAAAACC 126
Query 61 ATGATGACGGCGCTGCGTCGTCGCCGGGATTCAAGCTGGTCGGATTCTCCAAGTTCGTTA 120
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 127 ATGATGACGGCGCTGCGTCGTCGCCGGGATTCAAGCTCGTCGGATTTTCCAAGTTCGTAA 186
Query 121 GGAAGAATCCAAAGTCTGATAAATTCAAGGTTAAGCGTTTCCACCACATCGAGTTCTGGT 180
| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 187 GAAAGAATCCAAAGTCTGATAAATTCAAGGTTAAGCGCTTCCATCACATCGAGTTCTGGT 246
Query 181 GCGGCGACGCCACCAACGTCGCTCGTCGCTTCTCCTGGGGTCTCGGGATGAGGTTCTCCG 240
|||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 247 GCGGCGACGCAACCAACGTCGCTCGTCGCTTCTCCTGGGGTCTGGGGATGAGATTCTCCG 306
Query 241 CCAAATCCGATCTCTCCACCGGAAACATGGTTCACGCCTCTTACCTACTCACCTCCGGCG 300
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 307 CCAAATCCGATCTTTCCACCGGAAACATGGTTCACGCCTCTTACCTACTCACCTCCGGTG 366
Query 301 ACCTCCGATTCCTTTTCACTGCTCCTTACTCTCCGTCTCTCTCCGCCGGAGAAATTAAAC 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 367 ACCTCCGATTCCTTTTCACTGCTCCTTACTCTCCGTCTCTCTCCGCCGGAGAGATTAAAC 426
Query 361 CGACAATGACAGCTTCTATCCCAAGTTTCGATCACGTCTCTTGCCGCTCCTTCTTCTCTT 420
|||||| |||||||||||||||||||||||||||| |||||| || |||||||||||||
Sbjct 427 CGACAACCACAGCTTCTATCCCAAGTTTCGATCACGGCTCTTGTCGTTCCTTCTTCTCTT 486
Query 421 CACATGGTCTCGGCGTAAGAGCCGTTGCGATTGAAGTAGAAGACGCAGAGTCAGCTTTCT 480
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 CACATGGTCTCGGTGTTAGAGCCGTTGCGATTGAAGTAGAAGACGCAGAGTCAGCTTTCT 546
Query 481 CCATCAGTGTCGCTAATGGTGCTATTCCTTCGTCGCCTCCTATCGTCCTCGACGAAGCAG 540
|||||||||| |||||||| |||||||||||||||||||||||||||||| | |||||||
Sbjct 547 CCATCAGTGTAGCTAATGGCGCTATTCCTTCGTCGCCTCCTATCGTCCTCAATGAAGCAG 606
Query 541 TTACTATCGCTGAGGTTAAACTATACGGCGATGTTGTTCTCCGATATGTTAGTTACAAAG 600
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 TTACGATCGCTGAGGTTAAACTATACGGCGATGTTGTTCTCCGATATGTTAGTTACAAA- 665
Query 601 GCGGAA-ACACCGGTAAATCGGAATTCTTGCCAGGATTTGAGCCTGTGGAGGATACGTCG 659
|| ||| | |||| ||||| |||||||||||||| || |||| ||| |||||| |||||
Sbjct 666 GCAGAAGATACCGAAAAATCCGAATTCTTGCCAGGGTTCGAGCGTGTAGAGGATGCGTCG 725
Query 660 TCGTTTCCATTGGATTACGGTATACGTCGGCTTGACCACGCCGTGGGAAACGTTCCTGAG 719
||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 726 TCGTTCCCATTGGATTATGGTATCCGGCGGCTTGACCACGCCGTGGGAAACGTTCCTGAG 785
Query 720 CTTGGTCCGGCTTTGACTTATGTCGCGGGGTTCACTGGTTTTCACCAATTCGCAGAGTTC 779
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 786 CTTGGTCCGGCTTTAACTTATGTAGCGGGGTTCACTGGTTTTCACCAATTCGCAGAGTTC 845
Query 780 ACAGCAGACGACGTTGGAACCGCCGAGAGCGGTTTAAATTCAGCGGTCCTGGCTAACAAT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 846 ACAGCAGACGACGTTGGAACCGCCGAGAGCGGTTTAAATTCAGCGGTCCTGGCTAGCAAT 905
Query 840 GATGAGATGGTTCTTCTGCCGATTAACGAGCCAGTGCACGGGACGAAA-AGGAAGAGTCA 898
||||| ||||||||||| ||||||||||||||||||||||| || ||| |||||||||||
Sbjct 906 GATGAAATGGTTCTTCTACCGATTAACGAGCCAGTGCACGGAAC-AAAGAGGAAGAGTCA 964
Query 899 GATTCAGACGTATTTGGAACACAACGAAGGCGCAGGGCTACAACATCTTGCTCTGATGAG 958
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 965 GATTCAGACGTATTTGGAACATAACGAAGGCGCAGGGCTACAACATCTGGCTCTGATGAG 1024
Query 959 TGAAGACATATTCAGGACTCTGAGAGAGATGAGGAAGAGGAGCAGTGTTGGAGGATTCGA 1018
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1025 TGAAGACATATTCAGGACCCTGAGAGAGATGAGGAAGAGGAGCAGTATTGGAGGATTCGA 1084
Query 1019 CTTCATGCCTTCTCCTCCGCCTACTTACTACCAGAATCTGAAGAAACGGGTCGGCGACGT 1078
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1085 CTTCATGCCTTCTCCTCCGCCTACTTACTACCAGAATCTCAAGAAACGGGTCGGCGACGT 1144
Query 1079 GCTGAGCGATGAACAGATCAAGGAGTGTGAGGAATTAGGGATTCTTGTGGACAGAGATGA 1138
||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1145 GCTCAGCGATGATCAGATCAAGGAGTGTGAGGAATTAGGGATTCTTGTAGACAGAGATGA 1204
Query 1139 TCAAGGGACGTTGCTTCAAATCTTCACAAAACCACTTGGTGACAGGCCGACGATATTTAT 1198
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1205 TCAAGGGACGTTGCTTCAAATCTTCACAAAACCACTAGGTGACAGGCCGACGATATTTAT 1264
Query 1199 AGAGATAATCCAGAGAGTAGGATGCATGATGAAAGATGAGGAAGGGAAGGCTTACCAGAG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 AGAGATAATCCAGAGAGTAGGATGCATGATGAAAGATGAGGAAGGGAAGGCTTACCAGAG 1324
Query 1259 TGGAGGATGTGGTGGCTTTGGCAAAGGCAATTTCTCTGAGCTCTTCAAGTCCATTGAAGA 1318
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 TGGAGGATGTGGTGGTTTTGGCAAAGGCAATTTCTCTGAGCTCTTCAAGTCCATTGAAGA 1384
Query 1319 GTACGAGAAGACTCTTGAAGCCAAACAGCTT-GTGGGATGAACAAGAGGAAGAACCAACT 1377
||||| ||||||||||||||||||||| || ||||||||||||||| ||||||||||||
Sbjct 1385 ATACGAAAAGACTCTTGAAGCCAAACAG-TTAGTGGGATGAACAAGAAGAAGAACCAACT 1443
Query 1378 AAAATG-TTGTGTAATTAATGTATAACTGCTTTATGTTATCAAAACAAT 1425
||| | |||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 1444 AAAG-GATTGTGTAATTAATGTAAAACTGTTTTATCTTATCAAAACAAT 1491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70230562455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5