BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg919431 Length=638 Score E Sequences producing significant alignments: (Bits) Value AT1G07090.1 | Symbols: LSH6 | Protein of unknown function (DUF6... 1009 0.0 > AT1G07090.1 | Symbols: LSH6 | Protein of unknown function (DUF640) | chr1:2173952-2174894 REVERSE LENGTH=943 Length=943 Score = 1009 bits (546), Expect = 0.0 Identities = 608/637 (95%), Gaps = 8/637 (1%) Strand=Plus/Plus Query 1 CCaaaaaaaCCCTAGTTTTGAATGGAATCGGCGGATTCCGGGTCACAACGATCCGATCCG 60 ||||||||||||||||| ||||||||||||||||||||| || ||||||||||||| Sbjct 82 CCAAAAAAACCCTAGTTCTGAATGGAATCGGCGGATTCC-GG-----ACGATCCGATCCG 135 Query 61 GTAAAAGGAGACGACACGGGTCCATCTTTCGTCTCTTCGCCACCGGCTACACCAAGCAGG 120 ||||||||||||||| |||||||||||||||||||||| ||||| |||||||| |||||| Sbjct 136 GTAAAAGGAGACGACCCGGGTCCATCTTTCGTCTCTTCACCACCAGCTACACCTAGCAGG 195 Query 121 TATGAGTCACAGAAGCGACGTGACTGGAACACTTTCTTGCAGTACCTCAAGAACCACAAG 180 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 196 TATGAGTCACAGAAGCGACGCGACTGGAACACGTTCTTGCAGTACCTCAAGAACCACAAG 255 Query 181 CCGCCTCTCGCGTTGTCACGTTGTAGCGGAGCGCACGTGATCGAATTCCTCAAGTACCTC 240 |||||||||||||||||||| |||||||||||||| |||||||| || |||||||||||| Sbjct 256 CCGCCTCTCGCGTTGTCACGGTGTAGCGGAGCGCATGTGATCGAGTTTCTCAAGTACCTC 315 Query 241 GACCAGTTCGGCAAGACCAAAGTCCACGTGGCGGCTTGTCCTTACTTCGGCCATCAGCAA 300 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 316 GACCAGTTCGGTAAGACCAAAGTCCACGTGGCGGCTTGTCCTTACTTCGGCCATCAGCAA 375 Query 301 CCTCCGTCTCCTTGCTCATGCCCTCTCAAGCAAGCTTGGGGATCTCTCGACGCTTTGATC 360 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 376 CCTCCGTCTCCTTGCTCATGCCCTCTCAAGCAAGCTTGGGGATCTCTCGATGCTTTGATC 435 Query 361 GGACGGTTGAGAGCTGCCTACGAGGAGAACGGTGGACGGCCTGATTCAAACCCGTTCGCC 420 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 436 GGACGGTTGAGAGCTGCCTACGAGGAGAACGGTGGACGGCCGGATTCTAACCCGTTCGCC 495 Query 421 GCACGTGCGGT-CAGGATTTACTTAAGGGAAGTCAGAGAGAGTCAGGCCAAGGCTCGAGG 479 ||||||||||| | |||||||||| ||||||||||||||||||||||| |||||||| || Sbjct 496 GCACGTGCGGTTC-GGATTTACTTGAGGGAAGTCAGAGAGAGTCAGGCAAAGGCTCGTGG 554 Query 480 GATTCCTTACGAGAAAAAGAAACGGAAACGGCCACCAACTGTCACCACCGTTAGAGTTGA 539 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 555 GATTCCTTACGAGAAAAAGAAACGGAAACGGCCGCCAACTGTCACCACCGTTAGAGTTGA 614 Query 540 CGTCGCTTCTTCGAGACAAAGTGACGGAGACGCTTGTAACGTCGGTGCTCCATCTGTTGC 599 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 615 CGTCGCTTCTTCGAGACAAAGTGACGGAGACCCTTGTAACGTCGGTGCTCCATCTGTTGC 674 Query 600 CGAGGCCGTACCGCCTTAGATCGAATTATATATTATA 636 ||||||||||||||||||||||||||||||||| ||| Sbjct 675 CGAGGCCGTACCGCCTTAGATCGAATTATATATAATA 711 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30793532111 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5