BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919449
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07250.1 | Symbols: UGT71C4 | UDP-glucosyl transferase 71C4 ... 2204 0.0
> AT1G07250.1 | Symbols: UGT71C4 | UDP-glucosyl transferase 71C4
| chr1:2225900-2227566 FORWARD LENGTH=1667
Length=1667
Score = 2204 bits (1193), Expect = 0.0
Identities = 1378/1470 (94%), Gaps = 2/1470 (0%)
Strand=Plus/Plus
Query 14 AAGAGAGATGGAGAAGGAAACAGAGCTCATCTTCGTTCCAGTTCCATCCACAGGTCATAT 73
||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 57 AAGAGAGATGGTGAAGGAAACAGAGCTAATCTTCATTCCAGTTCCATCCACAGGTCATAT 116
Query 74 TCTCGTCCATATTGAATTCGCCAAGCGTCTCATCAATCTCGACCATCGGATCCACACAAT 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 117 TCTCGTCCATATTGAATTCGCCAAGCGTCTCATCAATCTCGACCATCGGATCCACACCAT 176
Query 134 CACTATCCTCAACTTGTCTTCACCCTCTGCTCCTGACGCCTCCGTCTTCGCCAGATCTCT 193
|||||| |||||||| || ||||||||| ||||| |||||||||||||||||||||||||
Sbjct 177 CACTATTCTCAACTTATCCTCACCCTCTTCTCCTCACGCCTCCGTCTTCGCCAGATCTCT 236
Query 194 CATCGCTTCACAGCCCAGAATACGTCTCCATGACCTTCCCTCTACCCAAGATCCTCCTCC 253
||||||||| ||||||| ||| |||||||| ||||||||| ||| |||||||||||||||
Sbjct 237 CATCGCTTCCCAGCCCAAAATCCGTCTCCACGACCTTCCCCCTATCCAAGATCCTCCTCC 296
Query 254 ATTTGATCTCTACCAAAGAGCTCCGGAAGCTTACATAGTAAAGCTCATCAAGAAAACTAC 313
||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||| |||
Sbjct 297 ATTCGATCTTTACCAAAGAGCTCCCGAAGCTTACATAGTAAAACTCATCAAGAAAAATAC 356
Query 314 TCCTCTGATCAAAGACGCCGTCTCCAGCATCGTCGAGTCGCGTCGTCGAGGATCAGATTC 373
||||||||| ||||||||||||||||||||||||| |||||||||| |||| ||||||||
Sbjct 357 TCCTCTGATAAAAGACGCCGTCTCCAGCATCGTCGCGTCGCGTCGTGGAGGCTCAGATTC 416
Query 374 GGTTCGAGTCGCCGGTCTGGTTCTCGATTTATTTTGCAATTCATTGATAAATGATGTTGG 433
||||| |||||||||| |||||||||||||||| |||||||||||| |||| ||||||||
Sbjct 417 GGTTCAAGTCGCCGGTTTGGTTCTCGATTTATTCTGCAATTCATTGGTAAAAGATGTTGG 476
Query 434 CAACGAGCTGAATCTTCCTTCCTACATATTCCTCACGTGTAACGCTAGATATTTGGGGAT 493
||||||||| ||||||||||| ||||||| ||| ||||||||||||||||| ||||||||
Sbjct 477 CAACGAGCTTAATCTTCCTTCTTACATATACCTTACGTGTAACGCTAGATACTTGGGGAT 536
Query 494 GATGAAATATATTCCAGATCGGCATCGGAAAATCGCATCTGAGTTCGATTTGAGCTCCGG 553
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GATGAAATATATTCCGGATCGGCATCGGAAAATCGCATCTGAGTTCGATTTGAGCTCCGG 596
Query 554 CGATGAGGAATTGCCGGTTCCAGGATTCATAAACGCTATTCCGACCAAATTTATGCCGCC 613
|||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 597 CGATGAAGAATTGCCGGTTCCGGGATTCATAAACGCTATTCCGACGAAATTTATGCCGCC 656
Query 614 TGGATTGTTCAACAAAGAAGCTTACGAGGCTTACGTCGAGCTAGCGCCGAGATTCGCCGA 673
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 657 TGGATTGTTCAATAAGGAAGCTTACGAGGCTTACGTAGAGCTAGCGCCGAGATTCGCAGA 716
Query 674 TGCGAAGGGTATTATGGTAAATTCCTTCGCCGAGCTTGAGCCACACCCGTTTGACTATTT 733
||||||||||||| |||| ||||||||| | ||||||||||| |||||||||||||||||
Sbjct 717 TGCGAAGGGTATTTTGGTTAATTCCTTCACGGAGCTTGAGCCGCACCCGTTTGACTATTT 776
Query 734 CTCTCACCTGGA-AAGCTTCCCTCCGGTGTACCCAGTCGGGCCGATTCTCAGCTTGAAAG 792
|||||||||||| || ||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 777 CTCTCACCTGGAGAAA-TTCCCTCCGGTTTACCCGGTCGGACCGATTCTCAGCTTGAAAG 835
Query 793 ATCGAGCGAGTCCGAACGAAGAAGCAGCCGATCGGGATCAGATCGTTGGGTGGCTTGATG 852
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 836 ATCGAGCGAGTCCGAACGAAGAAGCAGTCGATCGGGATCAGATCGTTGGGTGGCTCGATG 895
Query 853 ATCAGCCAGAGTCCTCGGTGGTGTTCCTCTGTTTCGGGAGCAGAGGAAGCGTTGATGAGA 912
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 ATCAGCCGGAGTCATCGGTGGTGTTCCTCTGTTTCGGGAGCAGAGGAAGCGTTGATGAGC 955
Query 913 CGCAAGTGAAGGAGATAGCTCAAGCGTTGGAACTCGTCGGCTGCAGATTTCTTTGGTCAA 972
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 956 CGCAAGTGAAGGAGATAGCTCGAGCTTTGGAACTCGTCGGCTGCAGATTTCTTTGGTCAA 1015
Query 973 TTCGAACAAGCGGCGCCGTGGGGACGAATGCTAACGATGTGTTGCCGGAGGGGTTCATGG 1032
|| |||||||||||| ||| | ||||||| ||||||||||||||||||||||||||||||
Sbjct 1016 TTAGAACAAGCGGCGACGTCGAGACGAATCCTAACGATGTGTTGCCGGAGGGGTTCATGG 1075
Query 1033 GCCGAGTAGCGGGCCGAGGTTTGGTATGTGGTTGGGCTCCACAAGTGGAAGTGTTGGCCC 1092
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GCCGAGTAGCAGGCCGAGGTTTGGTATGTGGTTGGGCTCCACAAGTGGAAGTGTTGGCCC 1135
Query 1093 ATAAAGCAATAGGCGGATTTGTGTCTCACTGTGGTTGGAATTCTACGCTTGAAAGCTTAT 1152
||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1136 ATAAAGCAATAGGAGGATTTGTGTCTCACTGTGGTTGGAACTCCACGCTTGAAAGCTTAT 1195
Query 1153 GGTTCGGCGTTCCTGTCGCCACGTGGCCGATGTACGCAGAGCAACAGCTTAACGCTTTCA 1212
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1196 GGTTCGGGGTTCCTGTCGCAACGTGGCCGATGTACGCAGAGCAACAGCTTAACGCCTTCA 1255
Query 1213 CGTTGGTGAAAGAGCTTGGACTTGCGGTGGATCTCCGGATGGATTACGTGTCGAATCGTG 1272
|| |||||||||||||||| ||||||||||| || ||||||||||||||||||| |||||
Sbjct 1256 CGCTGGTGAAAGAGCTTGGGCTTGCGGTGGACCTGCGGATGGATTACGTGTCGAGTCGTG 1315
Query 1273 GGGGTTTGGTGGCTTGTGATGAGATAGCCAGAGCCGTCCGATCGTTGATGGACGGTGGGG 1332
||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 1316 GGGGTTTGGTGACTTGTGATGAGATAGCCAGAGCCGTACGATCTTTGATGGACGGTGGAG 1375
Query 1333 ATGAGAAAAGGAAAAAGGTTAAGGAGATGGCTGATGCAGCGAGGAAGGCTTTGAGGGATG 1392
||||||| || |||||||||||||||||||||||||| || ||||||||||||| |||||
Sbjct 1376 ATGAGAAGAGAAAAAAGGTTAAGGAGATGGCTGATGCGGCAAGGAAGGCTTTGATGGATG 1435
Query 1393 GAGGATCGTCGTCTTTGGCAACTGCTCGATTCATCGGAGAATTGTTTGAAGATAGTTCGT 1452
|||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1436 GAGGATCGTCTTCTTTGGCAACTGCTCGATTCATCGCAGAATTGTTTGAAGATGGTTCGT 1495
Query 1453 CGTGTTAATGCAAATGTTGGTGCAATCATT 1482
|||| |||||||||||||||||| || |||
Sbjct 1496 CGTGCTAATGCAAATGTTGGTGCGATAATT 1525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73142194065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5