BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919501
Length=1883
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07725.1 | Symbols: ATEXO70H6, EXO70H6 | exocyst subunit exo... 2839 0.0
AT1G07728.1 | Symbols: | other RNA | chr1:2395461-2397345 FORW... 1483 0.0
> AT1G07725.1 | Symbols: ATEXO70H6, EXO70H6 | exocyst subunit exo70
family protein H6 | chr1:2394801-2397272 REVERSE LENGTH=2472
Length=2472
Score = 2839 bits (1537), Expect = 0.0
Identities = 1768/1881 (94%), Gaps = 10/1881 (1%)
Strand=Plus/Plus
Query 1 TTTCTTCAAACCCAAGAAACGATGGTGCTCTTGAAACCCTCTGCCTTAACAAAATCCTCT 60
|||||||||||||||||||| |||||||||||||||||| | ||||| |||||||||||
Sbjct 156 TTTCTTCAAACCCAAGAAACAATGGTGCTCTTGAAACCCACCACCTTATCAAAATCCTCT 215
Query 61 AAGCTCGGGCCGCAACAGCAACAAGGCTTCTCCGAGTCTCTAATCGGCGATAGTGTGGAG 120
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 216 AAGGTCGGGCCGCAACAGCAACAGGGCTTCTCCGAGTCTCTAATCGGCGATAGTGTGGAG 275
Query 121 GCAGCTGACGCGTTCATATGCCAATGGGTTACTCCACACCTTTACGACTCTTCTTCTTCT 180
||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 276 GCAGCTGACGCCTTCATATGCCAATGGGTTACTCCACACCTCTGCGACTCTTCTTCTTCT 335
Query 181 TCATGCAGCCTCTCTTCCCTCTTCTCCGCACAAAACCGCCTAGAAGGCAGACGCTTCCTC 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 336 TCATGCAGCCTCTCTTCCCTCTTCTCCGCTCAAAACCGCCTAGAAGGCAGACGCTTCCTC 395
Query 241 GAGGTTCTCGGCAGGTTACAATACACCATTCAGAGTACCGTTGCTATGAATCCGGACTCC 300
||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 396 GAGGTTCTCGGCAAGTTACAATACGCCATTCAGAGCACCGTTGCTATGAATCCGGACTCC 455
Query 301 GCTAAACTCGCTCAAGGGCAGGATTTGATGCGGAAAGCTATGAAGCATTTGGAGAAGGAG 360
||||| || ||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 GCTAAGCTTGCTAAAGGACAGGATTTGATGCGGAAAGCTATGAAGCATTTGGAGAAGGAG 515
Query 361 TTTTACCGGGTTTTGAAATCGAATCGCCGCTTTCTGAGTCCAGAATCCGTCTCTGGTTGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 TTTTACCGGGTTTTGAAATCGAATCGCCGCTTTCTGAGTCCAGAATCCGTCTCTGGTTGG 575
Query 421 TCATCTGAATCCAACACACCTTCGAGATCAAGTGGAACCGCTTCTGATTCTTCATCAGAT 480
|| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 576 TCTTCTGAATCCAACATACCTTCGAGATCAAGTGGAACCGCTTCGGATTCTTCATCAGAT 635
Query 481 GGAGAGCTTGATTCCGAATCTTCATCGGAATTAGGTAACGACA--G-AGGAGGA---AAT 534
||||||||| | || ||||| ||||||||||||||||| |||| | ||||||| |||
Sbjct 636 GGAGAGCTTTACTCTGAATCCTCATCGGAATTAGGTAAAGACATAGGAGGAGGAGGGAAT 695
Query 535 TCTGAAGCTATTGTGGATTTGAAGATGATAGCAAATTGCATGATCTCATCTGGTTACGAG 594
||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 696 TCTGATGCTATTGTTGATTTGAAGATGATAGCAAATTGCATGATCTCCTCTGGTTACGAG 755
Query 595 AAGGATTGTGTTAAAATATACAAGAAGTTTCGAAAAAAGATCATCGTCGACGCACTGTCT 654
||||||||||||||||| |||||||||||||| |||||||||||||||||| || |||||
Sbjct 756 AAGGATTGTGTTAAAATCTACAAGAAGTTTCGCAAAAAGATCATCGTCGACACATTGTCT 815
Query 655 CAGCTAGGGCTCGAGAAGCTAACCTCTACGCAGATGCAGAAACTGGAATGGGAGATTCTG 714
|| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 816 CATCTAGGGTTCGAGAAGCTAACCTCTACACAGATGCAGAAACTGGAATGGGAGATTCTG 875
Query 715 GAGAAGAAGATCAAAATATGGGTGAGGGTTGCGAGAGTAGCAATCAACACTCTGTTCAAC 774
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 876 GAGAAGAAGATCAAAATATGGGTGATTGTTGCGAGAGTAGCAATCACCACTCTGTTCAAC 935
Query 775 GGCGAACGTATCCTTTCCGATCACATTTTCTCCTCCTCCGCCGCTGAATCTTGCTTCGTG 834
|| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 936 GGAGAACGAATCCTTTCCGATCACATTTTCTCCTCCTCCGTCGCTGAATCTTGCTTCGTT 995
Query 835 GAGATTACGCTACAGAGCGCGTTAAACCTCTTCATCTTCTCACTAACAGTAGCAAAATCC 894
|| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 996 GACATAACGCTACAGAGCGCGTTAAACCTCTTCATCTTCTCACTAACCGTAGCGAAATCC 1055
Query 895 AGAAAAACTGCAGAGAAAATCTTCCCTACGCTTGACGTTTACCAGACAATCTTGCATCTG 954
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1056 AGAAAAACTGCAGAGAAGATCTTCCCTACGCTTGACGTTTACCAGACGATCTTGCAACTG 1115
Query 955 ATTCCCAAAATCGATCAGATCTTCAGCTACGATTCAACCGCTGCCGTTAGATTACAGGCG 1014
| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1116 ACTCCCAAAATCGATCAGATTTTTAGCTACGATTCAACCGCTGCCGTTAGATTACAGGCG 1175
Query 1015 AATGAATCTCTAGAGAAACTATCGGAATCGGTGAATGCGATGATGACGGAGTTTCAATCG 1074
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1176 AATGAATCTCTAGAGAAGCTATCGGAATCGGTGAATGCAATGATGACGGAGTTTCAATCG 1235
Query 1075 TCGATTACGAAAGAATCGTCGAAATCGGCGATATCTGGTGGCGGAGTTCACCAGCTCACG 1134
||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 1236 TCGATTACGAAGGAATCGTCGAAATCGGCGATTTCTGGCGGCGGAGTTCATCAGCTCACG 1295
Query 1135 AGGTATGTGATGAACTTCATCGTCTTCCTCGCAGACTACAGCGATTCTCTCGCTACAATT 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1296 AGGTATGTGATGAACTTCATCGTCTTCCTCGCAGACTACAGCGATTCTCTCGCCACCATT 1355
Query 1195 CTCAAGGAGTCATCGTTACCTTTACCAGAGGATTACTTCAGCAGCAGCGGCGAAGAAAAT 1254
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 1356 CTCAAGGAGTCATCGTTACCTTTACCGGAGGATTACTTCAGTAGCAGCGGCGAAGAGAAT 1415
Query 1255 CCAGGATCCGGTGGTCGGTCTCCGATGGCGGCGAGACTCGCGTGGTTGATACTGGTCTTG 1314
||||||||||||| ||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 1416 CCAGGATCCGGTGATCGTTCTCCGATGGCGGCGAGACTCGCGTGGTTGATTCTCGTCTTG 1475
Query 1315 CTCTGCAAAATCGACGCCAAATCTCGGCTCTACAACGACTCTGCTCTCTCGTATCTCTTC 1374
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1476 CTCTGTAAAATCGACGCCAAATCTCGGCTCTACAACGACTCGGCTCTATCGTATCTCTTC 1535
Query 1375 CTCGCCAACAACCTCCATTACGTTGTGACCAAGGTCCGTACATCGAACCTCAGAGTCGTA 1434
|| || ||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1536 CTAGCGAACAACCTCCATTACGTTGTGACCAAGGTCCGTACATCGAATCTCAGACTCGTA 1595
Query 1435 CTCGGAGACGATTGGGTAGCGAATCACGAGGTTAAAGTGAGTCAGTACCTCGAGAAATAC 1494
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1596 CTCGGAGACGATTGGGTAGCGAATCACGAGGTTAAAGTGAATCAATACCTCGAGAAATAC 1655
Query 1495 GAGAAAATGGCGTGGGGAGACGTGATTA-CGTCGATCCCCAGAGATTCAACGGCGGAGAC 1553
|| |||||||| ||||| || ||||| | ||||| ||||| | ||||||||||||| |||
Sbjct 1656 GAAAAAATGGCCTGGGGGGATGTGAT-AGCGTCGCTCCCCGGTGATTCAACGGCGGGGAC 1714
Query 1554 GGAGAGAG-AGGAGTCTCTGAGACGGTTCAACGAGGCGTTCGAAGAGGCTTACAAGAAGC 1612
|||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1715 GGAG-GCGGAGGAGTCTCTGAGACGGTTCAACGAGGCGTTCGAAGAGGCTTACAAGAAGC 1773
Query 1613 ACAAGACTTGGGTCGTACCCGACCCGAACCTGAGAGGCGAGATCCAAGCCTCCGTAGCGA 1672
||||||| |||||||||||||||||||||||||||| |||||||||||| ||| ||||||
Sbjct 1774 ACAAGACATGGGTCGTACCCGACCCGAACCTGAGAGACGAGATCCAAGCGTCCATAGCGA 1833
Query 1673 GAAAGCTCATGCCCGGGTATACGGGTTTCTATAAGAAATACCCGGTCGGGTCATGTGAGA 1732
|||| || |||||||||||||||||||||||||||||| |||||||||||||||| | |
Sbjct 1834 GAAAACTAATGCCCGGGTATACGGGTTTCTATAAGAAACACCCGGTCGGGTCATGCAATA 1893
Query 1733 TTGTCAGATTTACCCCTGAAGATCTTAATAATTACATAACCGACCTCTATATTGGTTTAG 1792
||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||
Sbjct 1894 TTGTCAGATTTACCCCTGAAGATCTAAATAATTACATAACCGACCTATATGTTGGTTTAG 1953
Query 1793 AAAGATCCGTGCCCGTATCCAAAACTAAGAAGTATATGGTTAGCCAAAGCCATGCGACGG 1852
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1954 GAAGATCCGTGCCCGTATCCAAAACTAAGAAGTATATGGTTAGCCCAAGCCATACGACGG 2013
Query 1853 ATTTGAAGTAATAGCTCTATG 1873
||||||||||||||||| |||
Sbjct 2014 ATTTGAAGTAATAGCTCCATG 2034
> AT1G07728.1 | Symbols: | other RNA | chr1:2395461-2397345 FORWARD
LENGTH=1791
Length=1791
Score = 1483 bits (803), Expect = 0.0
Identities = 917/973 (94%), Gaps = 4/973 (0%)
Strand=Plus/Minus
Query 678 CTCTACGCAGATGCAGAAACTGGAATGGGAGATTCTGGAGAAGAAGATCAAAATATGGGT 737
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 CTCTACACAGATGCAGAAACTGGAATGGGAGATTCTGGAGAAGAAGATCAAAATATGGGT 915
Query 738 GAGGGTTGCGAGAGTAGCAATCAACACTCTGTTCAACGGCGAACGTATCCTTTCCGATCA 797
|| ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||
Sbjct 914 GATTGTTGCGAGAGTAGCAATCACCACTCTGTTCAACGGAGAACGAATCCTTTCCGATCA 855
Query 798 CATTTTCTCCTCCTCCGCCGCTGAATCTTGCTTCGTGGAGATTACGCTACAGAGCGCGTT 857
||||||||||||||||| |||||||||||||||||| || || |||||||||||||||||
Sbjct 854 CATTTTCTCCTCCTCCGTCGCTGAATCTTGCTTCGTTGACATAACGCTACAGAGCGCGTT 795
Query 858 AAACCTCTTCATCTTCTCACTAACAGTAGCAAAATCCAGAAAAACTGCAGAGAAAATCTT 917
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 794 AAACCTCTTCATCTTCTCACTAACCGTAGCGAAATCCAGAAAAACTGCAGAGAAGATCTT 735
Query 918 CCCTACGCTTGACGTTTACCAGACAATCTTGCATCTGATTCCCAAAATCGATCAGATCTT 977
|||||||||||||||||||||||| |||||||| |||| |||||||||||||||||| ||
Sbjct 734 CCCTACGCTTGACGTTTACCAGACGATCTTGCAACTGACTCCCAAAATCGATCAGATTTT 675
Query 978 CAGCTACGATTCAACCGCTGCCGTTAGATTACAGGCGAATGAATCTCTAGAGAAACTATC 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 674 TAGCTACGATTCAACCGCTGCCGTTAGATTACAGGCGAATGAATCTCTAGAGAAGCTATC 615
Query 1038 GGAATCGGTGAATGCGATGATGACGGAGTTTCAATCGTCGATTACGAAAGAATCGTCGAA 1097
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 614 GGAATCGGTGAATGCAATGATGACGGAGTTTCAATCGTCGATTACGAAGGAATCGTCGAA 555
Query 1098 ATCGGCGATATCTGGTGGCGGAGTTCACCAGCTCACGAGGTATGTGATGAACTTCATCGT 1157
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 554 ATCGGCGATTTCTGGCGGCGGAGTTCATCAGCTCACGAGGTATGTGATGAACTTCATCGT 495
Query 1158 CTTCCTCGCAGACTACAGCGATTCTCTCGCTACAATTCTCAAGGAGTCATCGTTACCTTT 1217
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 494 CTTCCTCGCAGACTACAGCGATTCTCTCGCCACCATTCTCAAGGAGTCATCGTTACCTTT 435
Query 1218 ACCAGAGGATTACTTCAGCAGCAGCGGCGAAGAAAATCCAGGATCCGGTGGTCGGTCTCC 1277
||| |||||||||||||| |||||||||||||| |||||||||||||||| ||| |||||
Sbjct 434 ACCGGAGGATTACTTCAGTAGCAGCGGCGAAGAGAATCCAGGATCCGGTGATCGTTCTCC 375
Query 1278 GATGGCGGCGAGACTCGCGTGGTTGATACTGGTCTTGCTCTGCAAAATCGACGCCAAATC 1337
||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 374 GATGGCGGCGAGACTCGCGTGGTTGATTCTCGTCTTGCTCTGTAAAATCGACGCCAAATC 315
Query 1338 TCGGCTCTACAACGACTCTGCTCTCTCGTATCTCTTCCTCGCCAACAACCTCCATTACGT 1397
|||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||
Sbjct 314 TCGGCTCTACAACGACTCGGCTCTATCGTATCTCTTCCTAGCGAACAACCTCCATTACGT 255
Query 1398 TGTGACCAAGGTCCGTACATCGAACCTCAGAGTCGTACTCGGAGACGATTGGGTAGCGAA 1457
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 254 TGTGACCAAGGTCCGTACATCGAATCTCAGACTCGTACTCGGAGACGATTGGGTAGCGAA 195
Query 1458 TCACGAGGTTAAAGTGAGTCAGTACCTCGAGAAATACGAGAAAATGGCGTGGGGAGACGT 1517
||||||||||||||||| ||| ||||||||||||||||| |||||||| ||||| || ||
Sbjct 194 TCACGAGGTTAAAGTGAATCAATACCTCGAGAAATACGAAAAAATGGCCTGGGGGGATGT 135
Query 1518 GATTA-CGTCGATCCCCAGAGATTCAACGGCGGAGACGGA-GAGAGAGGAGTCTCTGAGA 1575
|| || ||||| ||||| | ||||||||||||| |||||| | | |||||||||||||||
Sbjct 134 GA-TAGCGTCGCTCCCCGGTGATTCAACGGCGGGGACGGAGGCG-GAGGAGTCTCTGAGA 77
Query 1576 CGGTTCAACGAGGCGTTCGAAGAGGCTTACAAGAAGCACAAGACTTGGGTCGTACCCGAC 1635
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 76 CGGTTCAACGAGGCGTTCGAAGAGGCTTACAAGAAGCACAAGACATGGGTCGTACCCGAC 17
Query 1636 CCGAACCTGAGAG 1648
|||||||||||||
Sbjct 16 CCGAACCTGAGAG 4
Score = 893 bits (483), Expect = 0.0
Identities = 556/591 (94%), Gaps = 6/591 (1%)
Strand=Plus/Minus
Query 1 TTTCTTCAAACCCAAGAAACGATGGTGCTCTTGAAACCCTCTGCCTTAACAAAATCCTCT 60
|||||||||||||||||||| |||||||||||||||||| | ||||| |||||||||||
Sbjct 1563 TTTCTTCAAACCCAAGAAACAATGGTGCTCTTGAAACCCACCACCTTATCAAAATCCTCT 1504
Query 61 AAGCTCGGGCCGCAACAGCAACAAGGCTTCTCCGAGTCTCTAATCGGCGATAGTGTGGAG 120
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1503 AAGGTCGGGCCGCAACAGCAACAGGGCTTCTCCGAGTCTCTAATCGGCGATAGTGTGGAG 1444
Query 121 GCAGCTGACGCGTTCATATGCCAATGGGTTACTCCACACCTTTACGACTCTTCTTCTTCT 180
||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1443 GCAGCTGACGCCTTCATATGCCAATGGGTTACTCCACACCTCTGCGACTCTTCTTCTTCT 1384
Query 181 TCATGCAGCCTCTCTTCCCTCTTCTCCGCACAAAACCGCCTAGAAGGCAGACGCTTCCTC 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1383 TCATGCAGCCTCTCTTCCCTCTTCTCCGCTCAAAACCGCCTAGAAGGCAGACGCTTCCTC 1324
Query 241 GAGGTTCTCGGCAGGTTACAATACACCATTCAGAGTACCGTTGCTATGAATCCGGACTCC 300
||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1323 GAGGTTCTCGGCAAGTTACAATACGCCATTCAGAGCACCGTTGCTATGAATCCGGACTCC 1264
Query 301 GCTAAACTCGCTCAAGGGCAGGATTTGATGCGGAAAGCTATGAAGCATTTGGAGAAGGAG 360
||||| || ||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 GCTAAGCTTGCTAAAGGACAGGATTTGATGCGGAAAGCTATGAAGCATTTGGAGAAGGAG 1204
Query 361 TTTTACCGGGTTTTGAAATCGAATCGCCGCTTTCTGAGTCCAGAATCCGTCTCTGGTTGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 TTTTACCGGGTTTTGAAATCGAATCGCCGCTTTCTGAGTCCAGAATCCGTCTCTGGTTGG 1144
Query 421 TCATCTGAATCCAACACACCTTCGAGATCAAGTGGAACCGCTTCTGATTCTTCATCAGAT 480
|| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1143 TCTTCTGAATCCAACATACCTTCGAGATCAAGTGGAACCGCTTCGGATTCTTCATCAGAT 1084
Query 481 GGAGAGCTTGATTCCGAATCTTCATCGGAATTAGGTAACGACA--G-AGGAGGA---AAT 534
||||||||| | || ||||| ||||||||||||||||| |||| | ||||||| |||
Sbjct 1083 GGAGAGCTTTACTCTGAATCCTCATCGGAATTAGGTAAAGACATAGGAGGAGGAGGGAAT 1024
Query 535 TCTGAAGCTATTGTGGATTTGAAGATGATAGCAAATTGCATGATCTCATCT 585
||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1023 TCTGATGCTATTGTTGATTTGAAGATGATAGCAAATTGCATGATCTCCTCT 973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93222412065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5