BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919812
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10370.1 | Symbols: GST30, ATGSTU17, GST30B, ERD9 | Glutathi... 1188 0.0
> AT1G10370.1 | Symbols: GST30, ATGSTU17, GST30B, ERD9 | Glutathione
S-transferase family protein | chr1:3397081-3398358 REVERSE
LENGTH=962
Length=962
Score = 1188 bits (643), Expect = 0.0
Identities = 684/704 (97%), Gaps = 1/704 (0%)
Strand=Plus/Plus
Query 1 TTTGGATCTTAGAAGAGAAAATGGCAAGCAGCGACGTGAAGCTGATCGGTGCATGGGCGA 60
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 TTTGGAT-TTTGAAGAGAAAATGGCAAGCAGCGACGTGAAGCTGATCGGTGCATGGGCGA 125
Query 61 GCCCCTTTGTGATGAGGCCGAGGATTGCTCTAAACCTCAAGTCTGTCCCCTACGAGTTCC 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 GTCCCTTTGTGATGAGGCCGAGGATTGCTCTAAACCTCAAGTCTGTCCCCTACGAGTTCC 185
Query 121 TCCAGGAGACGTTTGGGTCTAAGAGCGAGTTGCTTCTTAAATCAAACCCGGTTCACAAGA 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 TCCAAGAGACGTTTGGGTCTAAGAGCGAGTTGCTTCTTAAATCAAACCCGGTTCACAAGA 245
Query 181 AGATTCCGGTTCTTCTTCATGCTGATAAACCGGTGTGTGAGTCCAACATCATCGTTGAGT 240
|||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 246 AGATCCCGGTTCTGCTTCATGCTGATAAACCGGTGAGTGAGTCCAACATCATCGTTGAGT 305
Query 241 ATATCGATGACACTTGGAGCTCATCTGGACCGTCCATACTCCCTTCCGATCCTTACGATC 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 306 ATATCGATGACACTTGGAGCTCATCTGGACCGTCCATTCTCCCTTCCGATCCTTACGATC 365
Query 301 GGGCAATGGCTCGGTTCTGGGCTGCTTACATTGACGAAAAATGGTTTGTCGCTCTAAGAA 360
|||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 366 GGGCCATGGCTCGGTTCTGGGCTGCTTACATCGACGAAAAGTGGTTTGTCGCTCTAAGAG 425
Query 361 GTTTCCTAAAAGCCGGAGGAGAAGAAGAGAAGAAAGCTGTGATAGCTCAACTAGAAGAAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 GTTTCCTAAAAGCCGGAGGAGAAGAAGAGAAGAAAGCTGTGATAGCTCAACTAGAAGAAG 485
Query 421 GGAATGCGTTTCTAGAGAAGGCCTTCATCGATTGCAGCAAAGGAAAACCGTTCTTCAACG 480
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 486 GGAATGCGTTTCTGGAGAAGGCGTTCATTGATTGCAGCAAAGGAAAACCGTTCTTCAACG 545
Query 481 GTGACAACATCGGTTACCTAGACATTGCTCTTGGGTGCTTCTTGGCTTGGTTGAGAGTCA 540
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 546 GTGACAACATCGGTTACCTCGACATTGCTCTCGGGTGCTTCTTGGCTTGGTTGAGAGTCA 605
Query 541 CCGAGTTAGCAGTCAGCCATAAAATTCTTGATGAGGCCAAGACACCTTCTTTGTCCAAAT 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 CCGAGTTAGCAGTCAGCTATAAAATTCTTGATGAGGCCAAGACACCTTCTTTGTCCAAAT 665
Query 601 GGGCTGAGAATTTCTGTAATGATCCCGCTGTAAAACCTGTCATGCCAGAGACTGCCAAGC 660
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 666 GGGCTGAGAATTTCTGTAATGATCCCGCTGTAAAACCTGTCATGCCCGAGACTGCAAAGC 725
Query 661 TTGCTGAATTCGCAAAGAAGATCTTTCCTAAGCCGCAGGCCTAA 704
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 TTGCTGAATTCGCAAAGAAGATCTTTCCTAAGCCGCAGGCCTAA 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35214137047
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5