BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920010
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11840.6 | Symbols: GLX1 | glyoxalase I homolog | chr1:39953... 1639 0.0
> AT1G11840.6 | Symbols: GLX1 | glyoxalase I homolog | chr1:3995393-3997907
FORWARD LENGTH=1459
Length=1459
Score = 1639 bits (887), Expect = 0.0
Identities = 1029/1093 (94%), Gaps = 27/1093 (2%)
Strand=Plus/Plus
Query 11 TTTTTAGAAATATGGCTGAGGCTTCTGACTTGTTGGAATGGCCTAAGAAGGATAACCGTC 70
||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 208 TTTCTAGAAACATGGCTGAGGCTTCTGATTTGTTGGAATGGCCTAAGAAGGATAACCGTC 267
Query 71 GTTTTCTCCATGTTGTTTACCGCGTTGGTGATCTTGATCGTACCATTGCGTTTTACACTG 130
|||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 268 GTTTTCTCCATGTTGTCTACCGCGTTGGTGATCTTGATCGCACCATTGAGTTTTACACTG 327
Query 131 A-GTGCTTTGGTATGAAGCTGTTGAGGAAAAGAGATGTCCCTGAGGAGAAGTATTCTAAT 189
| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 328 AGGT-CTTTGGTATGAAGCTGTTGAGGAAAAGAGATATCCCTGAGGAGAAGTATTCTAAT 386
Query 190 GCTTTTCTCGGTTTTGGACCTGAAACATCTAACTTCGTTGTGGAGCTCACATATAACTAT 249
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 387 GCTTTTCTTGGTTTTGGACCTGAAACATCTAACTTTGTTGTGGAGCTCACATATAACTAT 446
Query 250 GGTGTTAGCTCATATGATATTGGAACTGGATTTGGGCATTTTGCCATTTCAACTCAAGAT 309
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 447 GGTGTTAGCTCATATGATATTGGAACTGGCTTTGGGCATTTTGCCATTTCAACTCAAGAT 506
Query 310 GTTTCCAAACTGGTTGAGACCGTCCGTGCCAAGGGTGGAAATGTCAGTAGGGAACCTGGT 369
||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||
Sbjct 507 GTTTCCAAACTGGTTGAGAACGTCCGTGCCAAGGGTGGAAATGTGACTAGGGAACCTGGT 566
Query 370 CCGGTCAAAGGTGGAGGCAGTGTCATTGCGTTTGTGAAGGACCCTGATGGCTACACTTTT 429
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 CCAGTCAAAGGTGGAGGCAGTGTCATTGCGTTTGTGAAGGACCCTGATGGCTACACTTTT 626
Query 430 GAGCTCATCCAAAGAGGTCCAACTCCTGAACCATTCTGTCAAGTCATGCTTCGTGTTGGT 489
||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 627 GAGCTCATCCAGAGAGGTCCAACTCCTGAACCTTTCTGCCAAGTCATGCTTCGTGTTGGT 686
Query 490 GATCTCGACCGTGCCATCAAATTCTACGAAAAGGCCCTGGGGATGAGACTCTTGAGAAAG 549
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 687 GATCTCGACCGTGCCATCAAATTCTATGAAAAGGCCCTCGGGATGAGACTCTTGAGAAAG 746
Query 550 ATTGAGAGACCTGAGTACAAGTACACCATAGGCATGATGGGATATGCTGAAGAATACGAG 609
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 747 ATTGAGAGACCTGAGTACAAGTACACCATAGGCATGATGGGGTATGCTGAAGAATACGAG 806
Query 610 TCGATAGTTTTGGAGCTGACCTATAACTACGGCGTGACTGAGTACACAAAGGGCAATGCA 669
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 807 TCGATAGTTTTGGAGCTGACCTATAACTACGACGTGACTGAGTACACAAAGGGCAATGCA 866
Query 670 TATGCACAGATTGCAATAGGCACAGATGATGTGTACAAAAGCGGTGAAGTTATTAAGATA 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 TATGCACAGATTGCAATAGGCACAGATGATGTGTACAAAAGCGGTGAAGTTATTAAGATA 926
Query 730 GTCAACCAAGAGCTGGGAGGAAAGATCACTAGAGAACCCGGACCTCTTCCTGGACTCGGC 789
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 927 GTCAACCAAGAGCTAGGAGGAAAGATCACTAGAGAAGCCGGACCTCTTCCTGGACTCGGC 986
Query 790 ACCAAGATTGTCGCATTCCTTGATCCAGATGGCTGGAAAACGGTTTTGGTGGACAACAAA 849
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 ACCAAGATTGTCTCATTCCTTGATCCAGATGGCTGGAAAACGGTTTTGGTGGACAACAAA 1046
Query 850 GATTTTCTGAAGGAACTGGAATGAGGAGAGCGATGA-TGT---TCGAGATCACAAAACCA 905
|||||||| |||||||||||||||| |||||||||| || |||||||||||||||||
Sbjct 1047 GATTTTCTCAAGGAACTGGAATGAGAAGAGCGATGAATGAAGGTCGAGATCACAAAACCA 1106
Query 906 TAATAATAAAAATGTGATCATGGAATAAA-GGAAAGACTTAGTGTTTGATCTAAAATAAG 964
||||||||||||||||||||| |||||| |||| ||||||| |||||||||||||||||
Sbjct 1107 TAATAATAAAAATGTGATCATAAAATAAAAGGAA-GACTTAGAGTTTGATCTAAAATAAG 1165
Query 965 ATGATGTGGTTAAGTTTGTGTCGTGCTATGTGTGTG--CTCGTTTCTTTTGTCC-----C 1017
| ||||||||| |||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1166 AAGATGTGGTTTAGTTTGTGTCGTGCTATGTGTGTGTGCTCGTTTCTTTTGTCTTTGAGC 1225
Query 1018 TTAA--GCTAAA-CTCTA-T------GGACCTGAATAAAAAATATTTCCACCACCTTGAG 1067
|||| | |||| ||||| | ||||||||||||||| ||||||||||||||||||
Sbjct 1226 TTAAAAGTTAAAACTCTAGTCTATATGGACCTGAATAAAAA-TATTTCCACCACCTTGAG 1284
Query 1068 CTTGAGGT-TTTG 1079
|| ||| ||||
Sbjct 1285 GTTTTGGTGTTTG 1297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53312978790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5