BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920022
Length=769
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11930.1 | Symbols: | Predicted pyridoxal phosphate-depende... 1227 0.0
> AT1G11930.1 | Symbols: | Predicted pyridoxal phosphate-dependent
enzyme, YBL036C type | chr1:4028692-4030535 FORWARD LENGTH=1102
Length=1102
Score = 1227 bits (664), Expect = 0.0
Identities = 735/770 (95%), Gaps = 2/770 (0%)
Strand=Plus/Plus
Query 1 AACACGTGGCGGATTCTACTATGTCTGCGGCGGCGATTGATGGCGTGGCGGCTTTGAGAT 60
||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||
Sbjct 117 AACACGTGGCGGATTCTACTATGTCGGCGGCGGCGATTGATGGTGTGGCGGCTCTGAGAT 176
Query 61 CGGTGTTTCAGCGGGTAAACCAAGCGGCGGAGAAAGCGGGTCGTGTGTCGGATCGA-ATA 119
|||||||||||||||||||||| |||||||||||||||||||||| |||||||| | |||
Sbjct 177 CGGTGTTTCAGCGGGTAAACCAGGCGGCGGAGAAAGCGGGTCGTGGGTCGGATC-AGATA 235
Query 120 CGGATCGTAGCGGTGAGCAAGACGAAACCAGTTTCTCTGATTCGTCAAGTATACGAGGCT 179
||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 236 CGGGTCGTAGCGGTGAGTAAGACGAAACCAGTTTCTCTGATTCGCCAAGTATACGACGCT 295
Query 180 GGACATAGGTCTTTTGGTGAGAATTATGTGCAAGAGATCATTGAGAAGGCACCTCAGCTT 239
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GGTCAGAGGTCTTTTGGAGAGAATTATGTGCAAGAGATCATTGAGAAGGCACCTCAGCTT 355
Query 240 CCAGAAGATATAGAGTGGCATTTCATTGGGAATTTGCAGAGCAACAAAGTGAAGCCTCTG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 356 CCAGAAGATATAGAGTGGCATTTCATTGGGAATTTGCAGAGCAACAAAGTGAAGCCTTTG 415
Query 300 CTATCTGGAGTTCCTAACCTTGTGATGGTGGAAAGTGTTGATGATGAAAAGATAGCAAAT 359
|||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 416 CTATCTGGTGTTCCTAACCTTGTGACCGTGGAAAGTGTTGATGATGAAAAGATTGCAAAT 475
Query 360 ATGCTTGATCGTGTGGTTGGAAATATCGGTAGAAAGCCCTTGAAGGTCTTGGTCCAAGTG 419
|||||||||||||||||||| |||||||| ||||||||||||||||| || |||||||||
Sbjct 476 ATGCTTGATCGTGTGGTTGGTAATATCGGAAGAAAGCCCTTGAAGGTATTTGTCCAAGTG 535
Query 420 AACACCAGTGGCGAAGAGTCTAAGTTCGGCGTGGACCCCTCAGGATGCGTAGGACTGGCG 479
|| |||||||| ||||| ||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 536 AATACCAGTGGTGAAGACTCTAAATTCGGCGTGGAACCCTCGGGATGCGTAGGACTGGCG 595
Query 480 AAACATGTGAAGGAAGCTTGCTCGAATCTTGAGTTTTCTGGATTGATGACAATAGGGATG 539
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 596 AAACACGTGAAGGAAGCTTGCTCGAATCTTGAGTTTTCTGGTTTGATGACAATAGGGATG 655
Query 540 GCTGATTACACTTCAACCCCAGAGAATTTCAAGTTGCTTGCGAAATGCAGAAGTGAAGTG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GCTGATTACACTTCAACCCCAGAGAATTTCAAGTTGCTTGCGAAATGCAGAAGTGAAGTG 715
Query 600 TGTAAAGAGCTTGGAATACCGGAGGAGCAATGTGAGCTATCTATGGGGATGTCTGGTGAC 659
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TGTAAGGAGCTTGGAATACCGGAGGAGCAATGTGAGCTATCTATGGGGATGTCTGGTGAC 775
Query 660 TTTGAACTAGCTTTACAGATTGAACTGGGAAGCACAAATGTGAGAATAGGATCTACAATT 719
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 776 TTTGAACTAGCATTGCAGATTGAACTGGGAAGCACAAATGTGAGAATAGGATCTACTATT 835
Query 720 TTCGGGGCGAGAGAGTATCCTAAGAAGTAATGATGTAAACTACTGAGTGA 769
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TTCGGGGCGAGAGAGTATCCTAAGAAGTAATGATGTAAACTACTGAGTGA 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37374205368
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5