BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920044
Length=2004
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12110.1 | Symbols: NRT1.1, CHL1-1, NRT1, B-1, ATNRT1, CHL1 ... 3193 0.0
> AT1G12110.1 | Symbols: NRT1.1, CHL1-1, NRT1, B-1, ATNRT1, CHL1
| nitrate transporter 1.1 | chr1:4105233-4109545 FORWARD LENGTH=2136
Length=2136
Score = 3193 bits (1729), Expect = 0.0
Identities = 1927/2019 (95%), Gaps = 28/2019 (1%)
Strand=Plus/Plus
Query 8 TCCATCTTCAAGATATGTCTCTTCCTGAAACTAAATCTGATG---TCCTTCTTGATGCTT 64
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 97 TCCATCTTCAAG--ATGTCTCTTCCTGAAACTAAATCTGATGATATCCTTCTTGATGCTT 154
Query 65 GGGACTTCCAAGGCCGCCCCGCCGATCGCTCAAAAACCGGCGGCTGGGCCAGCGCCGCCA 124
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 GGGACTTCCAAGGCCGTCCCGCCGATCGCTCAAAAACCGGCGGCTGGGCCAGCGCCGCCA 214
Query 125 TGATTCTTTGTATTGAGGCGGTGGAGAGGCTGACGACATTAGGTATCGGAGTTAACCTGG 184
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 215 TGATTCTTTGTATTGAGGCCGTGGAGAGGCTGACGACGTTAGGTATCGGAGTTAATCTGG 274
Query 185 TGACGTATTTGACGGGAACTATGCATTTAGGCAATGCAACGGCGGCTAACACTGTTACCA 244
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 275 TGACGTATTTGACGGGAACTATGCATTTAGGCAATGCAACTGCGGCTAACACCGTTACCA 334
Query 245 ATTTCCTCGGAACCTCTTTCATGCTCTGTCTCCTCGGTGGCTTCATCGCTGATACCTTTC 304
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 335 ATTTCCTCGGAACTTCTTTCATGCTCTGTCTCCTCGGTGGCTTCATCGCCGATACCTTTC 394
Query 305 TCGGCAGGTACCTAACGATTGCTATATTCGCCGCAATCCAAGCCACGGGTGTTTCAATCT 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 TCGGCAGGTACCTAACGATTGCTATATTCGCCGCAATCCAAGCCACGGGTGTTTCAATCT 454
Query 365 TAACTCTATCAACAATCATACCGGGACTTCGACCACCAAGATGCAACCCAACGACGTCGT 424
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 455 TAACTCTATCAACAATCATACCGGGACTTCGACCACCAAGATGCAATCCAACAACGTCGT 514
Query 425 CTCATTGCGAACAAGCAAGTGGAATACAATTGACGGTCCTATACTTAGCCTTATACCTCA 484
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 515 CTCACTGCGAACAAGCAAGTGGAATACAACTGACGGTCCTATACTTAGCCTTATACCTCA 574
Query 485 CCGCCCTAGGAACGGGGGGCGTGAAGGCTAGTGTCTCGGGTTTCGGGTCGGACCAATTCG 544
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 CCGCTCTAGGAACGGGAGGCGTGAAGGCTAGTGTCTCGGGTTTCGGGTCGGACCAATTCG 634
Query 545 ATGAGACCGAGCCTAAAGAACGATCAAAAATGACATATTTCTTCAACCGTTTCTTCTTTT 604
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 635 ATGAGACCGAACCAAAAGAACGATCGAAAATGACATATTTCTTCAACCGTTTCTTCTTTT 694
Query 605 GTATCAACGTTGGCTCTCTTTTAGCCGTGACGGTCCTTGTCTACGTACAAGACGATGTTG 664
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 695 GTATCAACGTTGGCTCTCTTTTAGCTGTGACGGTCCTTGTCTACGTACAAGACGATGTTG 754
Query 665 GACGCAAATGGGGCTATGGAATTTGTGCGTTTGCGATCGTGCTTGCACTCAGCGTTTTCT 724
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 755 GACGCAAATGGGGCTATGGAATTTGCGCGTTTGCGATCGTGCTTGCACTCAGCGTTTTCT 814
Query 725 TGGCCGGCACAAACCGCTACCGTTTCAAGAAGTTGATCGGTAGTCCGATGACGCAGGTTG 784
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 815 TGGCCGGAACAAACCGCTACCGTTTCAAGAAGTTGATCGGTAGCCCGATGACGCAGGTTG 874
Query 785 CTGCGGTTATCGTGGCAGCGTGGAGGAATAGAAAGCTCGAGCTGCCGGCAGATCCGTCGT 844
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 875 CTGCGGTTATCGTGGCGGCGTGGAGGAATAGGAAGCTCGAGCTGCCGGCAGATCCGTCCT 934
Query 845 ATCTCTACGACGTGGACGATATTATTGCGGCGGAAGGTTCGATGAAGGGTAAACAAAAGC 904
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 ATCTCTACGATGTGGATGATATTATTGCGGCGGAAGGTTCGATGAAGGGTAAACAAAAGC 994
Query 905 TGCCACACACCGAACAATTCCGTTCATTGGATAAGGCAGCAATAAGGGATCAGGAAGCGG 964
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 995 TGCCACACACTGAACAATTCCGTTCATTAGATAAGGCAGCAATAAGGGATCAGGAAGCGG 1054
Query 965 GAGTTACCTCGAATATATTCAACAAGTGGACACTCTCAACACTAACAGATGTTGAGGAAG 1024
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 GAGTTACCTCGAATGTATTCAACAAGTGGACACTCTCAACACTAACAGATGTTGAGGAAG 1114
Query 1025 TGAAACAAATCGTGCGGATGTTACCAATTTGGGCAACATGCATCCTCTTCTGGACCGTCC 1084
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 TGAAACAAATCGTGCGAATGTTACCAATTTGGGCAACATGCATCCTCTTCTGGACCGTCC 1174
Query 1085 ACGCTCAATTAACGACATTATCAGTAGCACAATCCGAGACTAT-GGACCGT-CACATCGG 1142
||||||||||||||||||||||||| |||||||||||||| || ||||||| | ||||||
Sbjct 1175 ACGCTCAATTAACGACATTATCAGTCGCACAATCCGAGAC-ATTGGACCGTTC-CATCGG 1232
Query 1143 GAGCTTTGAGATCCCTCCAGCATCGATGGCAGTCTTCTACGTCGGTGGCCTCCTCCTAAC 1202
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 GAGCTTCGAGATCCCTCCAGCATCGATGGCAGTCTTCTACGTCGGTGGCCTCCTCCTAAC 1292
Query 1203 CACCGCCCTCTATGACCGCGTCGCCATTCGCCTATGCAAAAAGCTATTCAACTACCCCCA 1262
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1293 CACCGCCGTCTATGACCGCGTCGCCATTCGTCTATGCAAAAAGCTATTCAACTACCCCCA 1352
Query 1263 TGGTCTTAGACCGCTTCAACGGATCGGTTTGGGGCTTTTATTCGGATCAATGGCTATGGC 1322
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1353 TGGTCTAAGACCGCTTCAACGGATCGGTTTGGGGCTTTTCTTCGGATCAATGGCTATGGC 1412
Query 1323 TGTGGCTGCTTTGGTAGAGCTAAAACGTCTTAGAACCGCGA-ATGCCCATGGTCCAACGG 1381
||||||||||||||| ||||| |||||||||||||| || | | || ||||||||||| |
Sbjct 1413 TGTGGCTGCTTTGGTCGAGCTCAAACGTCTTAGAACTGC-ACACGCTCATGGTCCAACAG 1471
Query 1382 TCAAAACACTTCCTCTAGGGTTTTATCTACTCATCCCACAATATCTTATTGTCGGTATCG 1441
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 TCAAAACGCTTCCTCTAGGGTTTTATCTACTCATCCCACAATATCTTATTGTCGGTATCG 1531
Query 1442 GCGAGGCGTTAATCTACACGGGACAGTTGGATTTCTTCTTGAGAGAGTGCCCTAAAGGCA 1501
|||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 1532 GCGAAGCGTTAATCTACACAGGACAGTTAGATTTCTTCTTGAGAGAGTGCCCTAAAGGTA 1591
Query 1502 TGAAAGGGATGAGCACGGGTCTATTGTTGAGCACATTGGCATTAGGGTTTTTCTTCAGCT 1561
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1592 TGAAAGGGATGAGCACGGGTCTATTGTTGAGCACATTGGCATTAGGCTTTTTCTTCAGCT 1651
Query 1562 CAGTTCTCGTGACCATCGTCGAGAAATTCACCGGGAAAGCTCATCCATGGATTGCCGATG 1621
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1652 CGGTTCTCGTGACAATCGTCGAGAAATTCACCGGGAAAGCTCATCCATGGATTGCCGATG 1711
Query 1622 ATCTCAACAAGGGACGTCTTTACAATTTCTACTGGCTTGTGGCCGTACTTGTCGCCTTGA 1681
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1712 ATCTCAACAAGGGCCGTCTTTACAATTTCTACTGGCTTGTGGCCGTACTTGTTGCCTTGA 1771
Query 1682 ACTTCCTCATTTTCCTCGTTTTCTCCAAGTGGTACGTTTACAAAGAAAAGAGACTAGCTG 1741
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1772 ACTTCCTCATTTTCCTAGTTTTCTCCAAGTGGTACGTTTACAAGGAAAAAAGACTAGCTG 1831
Query 1742 ATGTCGGGATTGAGTTGGATGATGAGCCGAGTATTCCAATGGGTCATTGATCATGA-T-C 1799
| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1832 AGGTGGGGATTGAGTTGGATGATGAGCCGAGTATTCCAATGGGTCATTGATCATGAATTC 1891
Query 1800 ATGAT---GAT---GA--AC-A-C-TG-TGCATGTCTATGTTGATATGTTTGA-TTTGAT 1846
||||| ||| || | | | | ||||||||||||||||||||||||| ||||||
Sbjct 1892 ATGATCATGATCATGATGATGAACATTATGCATGTCTATGTTGATATGTTTGAATTTGAT 1951
Query 1847 TTTGAGTTTTGTG-GTATATTTAATGATGATTTTTCTTAATTACCTCTTGTTTCCGAGTC 1905
|||||||||||| |||||||| |||||| |||| |||||||||||||||||||||||||
Sbjct 1952 TTTGAGTTTTGTTTGTATATTTTATGATGCTTTT-CTTAATTACCTCTTGTTTCCGAGTC 2010
Query 1906 GACAAATAATGGACCGACCGATAAGGGATAAAAGTTAAAGTTTTCCCATCAGGTTCTGTA 1965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2011 GACAAATAATGGACCGACCGATAAGGGATAAAAGTTAAAGTTTTCCCATCAGGTTCTGTA 2070
Query 1966 TAAAAGCAGAAATTGTAAAATTTCCTAAGATTTGACGCA 2004
|||||||||||||||||| ||||| ||||||||||||||
Sbjct 2071 TAAAAGCAGAAATTGTAACATTTCTTAAGATTTGACGCA 2109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99296678010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5