BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920195

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G13245.1 | Symbols: RTFL17, DVL4 | ROTUNDIFOLIA like 17 | ch...   239    9e-63


> AT1G13245.1 | Symbols: RTFL17, DVL4 | ROTUNDIFOLIA like 17 | 
chr1:4525486-4526064 REVERSE LENGTH=579
Length=579

 Score =  239 bits (129),  Expect = 9e-63
 Identities = 137/141 (97%), Gaps = 0/141 (0%)
 Strand=Plus/Plus

Query  67   ATCGATATATCGAAGATGAAGATGGGAGGTTCAAAGAGAAGAGTATCGAGTAAAGGACTT  126
            ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  73   ATCGATATATCAAAGATGAAGATGGGAGGTTCAAAGAGAAGAGTATCGAGCAAAGGACTT  132

Query  127  GGAGCTGTTCTTAAAGAACAAAGAGCTAAGCTTTACATCATTCGAAGATGTGTCGTCATG  186
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  133  GGAGCTGTTCTTAAAGAACAAAGAGCTAAGCTATACATCATTCGAAGATGTGTCGTCATG  192

Query  187  CTACTTTGTTGGCACGATTGA  207
            || ||||||||||||||||||
Sbjct  193  CTTCTTTGTTGGCACGATTGA  213



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10254620796


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5